PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E01022.1.p

Common Name

EUGRSUZ_E01022

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Nin-like

Protein Properties

Length: 718aa MW: 79035.8 Da PI: 6.7715

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E01022.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.4	1.4e-28	312	362	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Eucgr.E01022.1.p 312 EKCISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKISKV 362 789*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	301	382	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-25	315	362	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.08E-22	617	706	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.6E-26	622	704	No hit	No description
PROSITE profile	PS51745	25.629	622	704	IPR000270	PB1 domain
SMART	SM00666	6.2E-26	622	704	IPR000270	PB1 domain
Pfam	PF00564	4.4E-18	622	703	IPR000270	PB1 domain
CDD	cd06407	4.52E-35	623	703	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MLDIKILQWF AFSFFLHRLL NQICNEGRHN ALAEILEILT VTCETHKLPL AQTWVPCQHR 60 SVLANGGGLK KSCSSIDGSC MAQVCMSTTD VAFYVVDAHM WGFREACVEH HLQKGQGVAG 120 RAFLSQSSCF SKDITQFCKS EYPLVHYARM FGLTSCFAIC LRSSHTGNDD YILEFFLPPG 180 ITNSGEQQSL LSSLLSTMRK HFKSLMVASG KTLQLEDKSI EFIEAVLNER LDSRVDSLQI 240 PTYTELLAGP LYLPNGGVAR QLDSSKQLLV DIVDVINDEV NPVMAIASEN VVTFPENNVM 300 KKKSEKRRGK AEKCISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIS 360 KVNRSLSKLK HVIESVHGAE ETFSISALAT SPLPIAVGSI SWPPSLKESN ELNPPQAKAL 420 EAQGEGMNRS PSKLPRTDEE AAVQNKSYER VPQEEQLLNE HGRSSPEFAG APSRSKSRSG 480 SREQSAGTPT SHGSCQGSPA NESLPVKDQS GSPHNDQCIK RGGSLEVMFK STNAQNFSAA 540 YSMPDALGVT ELQEPFGGML IEDTGSSKDL RNLCPSVADA VLEDRVPESS RTNPPCSDMA 600 SKQAATFLRT TPRTTPRQDM TTVTIKATYR EDIIRFRISL SSSIVELREQ VAKRLKLEVG 660 TFDIKYLDDD HEWVLVACDA DWQECMDFSR SSGCNMIRLL VHDVMANLGS SCESSGE*

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MLDIKILQWF AFSFFLHRLL NQICNEGRHN ALAEILEILT VTCETHKLPL AQTWVPCQHR  60
SVLANGGGLK KSCSSIDGSC MAQVCMSTTD VAFYVVDAHM WGFREACVEH HLQKGQGVAG  120
RAFLSQSSCF SKDITQFCKS EYPLVHYARM FGLTSCFAIC LRSSHTGNDD YILEFFLPPG  180
ITNSGEQQSL LSSLLSTMRK HFKSLMVASG KTLQLEDKSI EFIEAVLNER LDSRVDSLQI  240
PTYTELLAGP LYLPNGGVAR QLDSSKQLLV DIVDVINDEV NPVMAIASEN VVTFPENNVM  300
KKKSEKRRGK AEKCISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIS  360
KVNRSLSKLK HVIESVHGAE ETFSISALAT SPLPIAVGSI SWPPSLKESN ELNPPQAKAL  420
EAQGEGMNRS PSKLPRTDEE AAVQNKSYER VPQEEQLLNE HGRSSPEFAG APSRSKSRSG  480
SREQSAGTPT SHGSCQGSPA NESLPVKDQS GSPHNDQCIK RGGSLEVMFK STNAQNFSAA  540
YSMPDALGVT ELQEPFGGML IEDTGSSKDL RNLCPSVADA VLEDRVPESS RTNPPCSDMA  600
SKQAATFLRT TPRTTPRQDM TTVTIKATYR EDIIRFRISL SSSIVELREQ VAKRLKLEVG  660
TFDIKYLDDD HEWVLVACDA DWQECMDFSR SSGCNMIRLL VHDVMANLGS SCESSGE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E01022.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018729662.1	0.0	PREDICTED: protein NLP7 isoform X3
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A059C269	0.0	A0A059C269_EUCGR; Uncharacterized protein
STRING	XP_010055982.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Eucgr.E01022.1.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]