PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01007.1.p
Common NameEUGRSUZ_E01007
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 176aa    MW: 20585.6 Da    PI: 9.7669
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14.2e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien+ nrqvt+skRrng++KKA+E+SvLC+a+v++iif+ + k++ey++
  Eucgr.E01007.1.p  9 KRIENTNNRQVTYSKRRNGLIKKAKEISVLCNAKVSLIIFGGSKKMHEYCT 59
                      79***********************************************96 PP
2K-box80.24.9e-2771163193
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       y+++ gk+l++ak+e+l+ e++++kke++nLq ++Rhl G+d++sL++keL  L + Le++l  +R++K+e++ ++ ++ ++ e+e++e n +
  Eucgr.E01007.1.p  71 YHRQCGKRLWDAKHENLNGEIDRIKKENDNLQIKLRHLNGQDINSLNHKELIVLDDVLENGLAFVRDQKMEVINTHRRNHKMLEEENKELNYY 163
                       67788999*********************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.754161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-34296IPR002100Transcription factor, MADS-box
CDDcd002651.44E-37280No hitNo description
PRINTSPR004041.8E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-1782161IPR002487Transcription factor, K-box
PROSITE profilePS5129712.89784171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGRGKIEIKR IENTNNRQVT YSKRRNGLIK KAKEISVLCN AKVSLIIFGG SKKMHEYCTP  60
STKLTDILDE YHRQCGKRLW DAKHENLNGE IDRIKKENDN LQIKLRHLNG QDINSLNHKE  120
LIVLDDVLEN GLAFVRDQKM EVINTHRRNH KMLEEENKEL NYYAQPLQPN LQERI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16171169MEF2 CHIMERA
6byy_B1e-16171169MEF2 CHIMERA
6byy_C1e-16171169MEF2 CHIMERA
6byy_D1e-16171169MEF2 CHIMERA
6bz1_A1e-16171169MEF2 CHIMERA
6bz1_B1e-16171169MEF2 CHIMERA
6bz1_C1e-16171169MEF2 CHIMERA
6bz1_D1e-16171169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055971.11e-119PREDICTED: floral homeotic protein PMADS 2
SwissprotQ0HA258e-84MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A059C2Y81e-124A0A059C2Y8_EUCGR; Uncharacterized protein
STRINGXP_010055971.11e-118(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.19e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]