PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01006.2.p
Common NameEUGRSUZ_E01006
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 176aa    MW: 20256.9 Da    PI: 7.1135
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01006.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.8e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien+ nrqvt+skRrng++KKA+E+SvLCda+v+viif+s+gk++ey+s
  Eucgr.E01006.2.p  9 KRIENSNNRQVTYSKRRNGLIKKAKEISVLCDAQVSVIIFGSSGKMHEYCS 59
                      79***********************************************96 PP
2K-box89.56.4e-3071163193
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       y+++ gk+l++ak+e+l++el+++kke++nLq ++Rhl+Ged++sL+++eL  Le+ Le++l  +R++K+e+l+++ +++++ e++++e + +
  Eucgr.E01006.2.p  71 YHTQCGKRLWDAKQENLSNELDRIKKENDNLQIQLRHLKGEDITSLNHRELIILEDTLENGLGCVRDQKDEVLMTHRRNQKQLEEDAKELHFY 163
                       78889999********************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.861161IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-35296IPR002100Transcription factor, MADS-box
CDDcd002653.06E-40280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1782161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.04784175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGRGKIEIKR IENSNNRQVT YSKRRNGLIK KAKEISVLCD AQVSVIIFGS SGKMHEYCSS  60
NTSLVDILDQ YHTQCGKRLW DAKQENLSNE LDRIKKENDN LQIQLRHLKG EDITSLNHRE  120
LIILEDTLEN GLGCVRDQKD EVLMTHRRNQ KQLEEDAKEL HFYAVTPSTY DQLDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-18161161MEF2 CHIMERA
6byy_B4e-18161161MEF2 CHIMERA
6byy_C4e-18161161MEF2 CHIMERA
6byy_D4e-18161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01006.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0299760.0AF029976.1 Eucalyptus grandis MADS box protein (EGM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289656.11e-117floral homeotic protein GLOBOSA-like
SwissprotQ0HA251e-81MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A059C3N81e-125A0A059C3N8_EUCGR; Uncharacterized protein
STRINGXP_010055970.11e-116(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-73MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]