PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00888.2.p
Common NameEUGRSUZ_E00888
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 622aa    MW: 68906.7 Da    PI: 8.3312
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00888.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.4e-24122222198
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+kvlt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  Eucgr.E00888.2.p 122 FCKVLTASDTSTHGGFSVLRKHATEClppldMKQATPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGD 212
                       99****************************9555556679************************************************..348 PP

                       EE..EEEEE- CS
                B3  89 efelvvkvfr 98 
                       ++el+v+v r
  Eucgr.E00888.2.p 213 NGELRVGVKR 222
                       8999999976 PP
2Auxin_resp106.72.7e-35248327183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++t++ F v+Y+Pr+  s+F+++++k+++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p +W nS WrsLk
  Eucgr.E00888.2.p 248 ASHAVTTQTLFVVYYKPRT--SQFIISLNKYLEALNNKFTVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-QWDNSSWRSLK 327
                       689***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-41113237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-40113251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-20120222No hitNo description
PfamPF023626.2E-22122222IPR003340B3 DNA binding domain
SMARTSM010193.5E-23122224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041122224IPR003340B3 DNA binding domain
PfamPF065076.7E-33248327IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MMMNRAEGRG GGGGDDLYTE LWKACAGPLV DVPRHGDRVY YFPQGHMEQL EASTNQELNQ  60
RIPLFNLTSK ILCQVVNVQL LAEQETDEVY AQITLIPAGN LMEPTSPDPV SAETPRTRVH  120
SFCKVLTASD TSTHGGFSVL RKHATECLPP LDMKQATPTQ ELVAKDLHGY EWKFKHIFRG  180
QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GDNGELRVGV KRVARQQSSM PSSVISSQSM  240
HLGVLATASH AVTTQTLFVV YYKPRTSQFI ISLNKYLEAL NNKFTVGMRF KMRFEGEDSP  300
ERRFSGTIVG VEDFSPQWDN SSWRSLKVHW DEHASIPRPD RVSPWEIEPF VASVPANIPQ  360
STTKNKRPRP SSEVPADATA APAIWNSGYT QTHDLKQLRV TDEGKSSDHF MWNYKMADVN  420
SSSSSITRVQ TEGGWLPSPC LSVSPNILPD AVDDSKSVSA LPVPCRHPIA HPSSLNNELM  480
PNPAEDGKKV EPTSSCRLFG IDLINHTLSS PPSDKGPFQS MCVSTATTEG HVQMALSTAD  540
SDQKCDIQKA SEEVKQRQMQ NLGKEGQTKQ ICSTRSRTKV CSNARNGCRS CCGLDHVGRV  600
QSIDERARRD VRPQRTASVS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17443505355Auxin response factor 1
4ldw_A1e-17443505355Auxin response factor 1
4ldw_B1e-17443505355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365369KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00888.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055888.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A059C1Z30.0A0A059C1Z3_EUCGR; Auxin response factor
STRINGXP_010055888.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9