PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00834.1.p
Common NameEUGRSUZ_E00834
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 326aa    MW: 34403.1 Da    PI: 6.6387
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00834.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.3e-21114164155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr+++ +g+W+AeIrdp++    +r++lg+fgtaeeAa  +++a+ +l+g
  Eucgr.E00834.1.p 114 KKFRGVRQRP-WGKWAAEIRDPKK---GTRVWLGTFGTAEEAALVYDNAAIQLRG 164
                       59********.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.75E-32114171No hitNo description
SuperFamilySSF541718.5E-22115172IPR016177DNA-binding domain
PfamPF008475.1E-14115164IPR001471AP2/ERF domain
SMARTSM003801.4E-39115178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-30115172IPR001471AP2/ERF domain
PROSITE profilePS5103223.406115172IPR001471AP2/ERF domain
PRINTSPR003671.9E-10116127IPR001471AP2/ERF domain
PRINTSPR003671.9E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPPVKFTEHC THTTLVRPDH HLNSPKTRPE MNPKVLRISY TDGDATDSSS DDEEAELLPR  60
RRVKKFVHEI ALQSDGGDGD AGSGRAKAKR RKPSGNPGTP VSGGDLKAST GGGKKFRGVR  120
QRPWGKWAAE IRDPKKGTRV WLGTFGTAEE AALVYDNAAI QLRGPDALTN FSTPPAESMP  180
PPPPKNGVVP PLPPTAAAAT ASSSSSVSGE GSSRRASSPT SVLRGVSGEE ADSPVGEAAK  240
ESCVSENFPQ PSARSALDLY LPAETFGFQS SRSDLSGSFS GLYTGDDLLA NLGDDLGAGF  300
GSPDWTFYDH VRDVGDILRL DPHVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22113171362ATERF1
3gcc_A3e-22113171362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00834.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055834.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLA0A059C2B40.0A0A059C2B4_EUCGR; Uncharacterized protein
STRINGXP_010055834.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-38cytokinin response factor 2