PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00570.1.p
Common NameEUGRSUZ_E00570, LOC104443791
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 133aa    MW: 14670.7 Da    PI: 9.2214
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00570.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC104.56.9e-33221041798
             NF-YC  17 knhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                       ++h+lPlarikki+k +d+ v+mis eaP+++s+a elf+ elt +sw+ a e krrtl++ d+ +a++ td+fdflvd v  
  Eucgr.E00570.1.p  22 QQHSLPLARIKKIMKkSDDGVEMISGEAPIVFSRAIELFVEELTRKSWMLAAEDKRRTLQRDDVVSAIQGTDVFDFLVDLVCV 104
                       79************735778***********************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.41E-261998IPR009072Histone-fold
PfamPF008082.1E-192589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.1E-2926102IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MRQAGIYSRI SSSSSSGRRG SQQHSLPLAR IKKIMKKSDD GVEMISGEAP IVFSRAIELF  60
VEELTRKSWM LAAEDKRRTL QRDDVVSAIQ GTDVFDFLVD LVCVPDQQNE RKESPVGSET  120
ETVGSKRTKV GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-31221021493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00570.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055617.15e-92PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotA6BLW42e-30NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2
TrEMBLA0A059C0X91e-90A0A059C0X9_EUCGR; Uncharacterized protein
STRINGXP_010055617.12e-91(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.34e-24nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]