PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E00542.1.p | ||||||||
Common Name | EUGRSUZ_E00542, LOC104446002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 35729.1 Da PI: 4.5968 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 70.8 | 3.5e-22 | 4 | 121 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 ++F+Ptde l ++yL++k++g +l+ i+e+d+y+ ePw++ + ++e+ y F++ +k+ ++r r++ sg+Wk++ + + + Eucgr.E00542.1.p 4 LVKFRPTDEHLFDHYLQQKATGAPLPP-GLIEECDLYSQEPWRIF-DT-TSEQTFYVFTTLRKN---KSRVLRTAGSGTWKEQHAMR-IPDIL 89 589*********************999.89**************6.32.345667888877664...579***********998754.55558 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 gel g kk++ f gr +++++ +W+m e+++ Eucgr.E00542.1.p 90 GELAGYKKSFKFQGGRGSSATSGRWIMYEFSM 121 99****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.841 | 1 | 137 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-14 | 3 | 120 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-27 | 5 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MNPLVKFRPT DEHLFDHYLQ QKATGAPLPP GLIEECDLYS QEPWRIFDTT SEQTFYVFTT 60 LRKNKSRVLR TAGSGTWKEQ HAMRIPDILG ELAGYKKSFK FQGGRGSSAT SGRWIMYEFS 120 MCDERQCKYV LCKIKFYRDK KKLKDKEIVI SADIPVQFED ENRRAKRMCL LNDSGDRSSV 180 ICDFAIASSS TVDGAQPATS QAFSSSVAYA EQLQMSAGAY ADLLPMTAEQ VINDDDEWID 240 RLMDMDIDPV VDADYLFGSN PFANPSEDDT NAMLASTLST PDNQTWGPTS LHQQRSVADA 300 QEQNVPATLA CADQFLLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-16 | 1 | 134 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-16 | 1 | 134 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-16 | 1 | 134 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-16 | 1 | 134 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-16 | 1 | 134 | 20 | 165 | NAC domain-containing protein 19 |
3swm_B | 8e-16 | 1 | 134 | 20 | 165 | NAC domain-containing protein 19 |
3swm_C | 8e-16 | 1 | 134 | 20 | 165 | NAC domain-containing protein 19 |
3swm_D | 8e-16 | 1 | 134 | 20 | 165 | NAC domain-containing protein 19 |
3swp_A | 8e-16 | 1 | 134 | 20 | 165 | NAC domain-containing protein 19 |
3swp_B | 8e-16 | 1 | 134 | 20 | 165 | NAC domain-containing protein 19 |
3swp_C | 8e-16 | 1 | 134 | 20 | 165 | NAC domain-containing protein 19 |
3swp_D | 8e-16 | 1 | 134 | 20 | 165 | NAC domain-containing protein 19 |
4dul_A | 8e-16 | 1 | 134 | 17 | 162 | NAC domain-containing protein 19 |
4dul_B | 8e-16 | 1 | 134 | 17 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E00542.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018720427.1 | 1e-149 | PREDICTED: NAC domain-containing protein 41-like | ||||
TrEMBL | A0A059C0V6 | 0.0 | A0A059C0V6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058220.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13343 | 7 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 1e-17 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E00542.1.p |
Entrez Gene | 104446002 |