PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00541.1.p
Common NameEUGRSUZ_E00541, LOC104446000
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 319aa    MW: 35752.1 Da    PI: 4.554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00541.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.83.5e-2241214128
               NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                        ++F+Ptde l ++yL++k++g +l+    i+e+d+y+ ePw++   + ++e+  y F++ +k+   ++r  r++ sg+Wk++   + + +  
  Eucgr.E00541.1.p   4 LVKFRPTDEHLFDHYLQQKATGAPLPP-GLIEECDLYSQEPWRIF-DT-TSEQTFYVFTTLRKN---KSRVLRTAGSGTWKEQHAMR-IPDIL 89 
                       589*********************999.89**************6.32.345667888877664...579***********998754.55558 PP

               NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                       gel g kk++ f  gr +++++ +W+m e+++
  Eucgr.E00541.1.p  90 GELAGYKKSFKFQGGRGSSATSGRWIMYEFSM 121
                       99****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.8411137IPR003441NAC domain
PfamPF023651.2E-143120IPR003441NAC domain
SuperFamilySSF1019414.84E-275136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNPLVKFRPT DEHLFDHYLQ QKATGAPLPP GLIEECDLYS QEPWRIFDTT SEQTFYVFTT  60
LRKNKSRVLR TAGSGTWKEQ HAMRIPDILG ELAGYKKSFK FQGGRGSSAT SGRWIMYEFS  120
MCDERQCKYV LCKIKFYRDK KKLKDKEIVI SADIPVQFED ENRRAKRMCL LNDSGDRSSV  180
ICDFAIASSS TVDGAQPATS QAFSSSVAYA EQLQMSAGAY ADLLPTTAEQ VINDDDEWID  240
RLMDMDIDPV VDADYLFGSN PFANPSEDDT NAMLASTLGT PDNQTWGPTS LHQQRSVAES  300
QEQDVPATLA WADPFLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-16113417162NO APICAL MERISTEM PROTEIN
1ut4_B9e-16113417162NO APICAL MERISTEM PROTEIN
1ut7_A9e-16113417162NO APICAL MERISTEM PROTEIN
1ut7_B9e-16113417162NO APICAL MERISTEM PROTEIN
3swm_A9e-16113420165NAC domain-containing protein 19
3swm_B9e-16113420165NAC domain-containing protein 19
3swm_C9e-16113420165NAC domain-containing protein 19
3swm_D9e-16113420165NAC domain-containing protein 19
3swp_A9e-16113420165NAC domain-containing protein 19
3swp_B9e-16113420165NAC domain-containing protein 19
3swp_C9e-16113420165NAC domain-containing protein 19
3swp_D9e-16113420165NAC domain-containing protein 19
4dul_A9e-16113417162NAC domain-containing protein 19
4dul_B9e-16113417162NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00541.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058227.11e-171PREDICTED: NAC domain-containing protein 71
TrEMBLA0A059C1490.0A0A059C149_EUCGR; Uncharacterized protein
STRINGXP_010058219.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.12e-17NAC domain containing protein 52