PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00377.1.p
Common NameEUGRSUZ_E00377, LOC104443644
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 329aa    MW: 36180.7 Da    PI: 4.9635
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00377.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20181231255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAa+a+++a+ kl+g
  Eucgr.E00377.1.p 181 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDTAIEAARAYDEAAFKLRG 231
                       7********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-33180240IPR001471AP2/ERF domain
CDDcd000185.75E-31181239No hitNo description
PROSITE profilePS5103224.829181239IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-23181240IPR016177DNA-binding domain
SMARTSM003801.7E-37181245IPR001471AP2/ERF domain
PfamPF008475.1E-15181231IPR001471AP2/ERF domain
PRINTSPR003671.6E-10182193IPR001471AP2/ERF domain
PRINTSPR003671.6E-10205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MATSSITEVS TRLQLIEQHL LGEFSPTDAA FPAHLAPAPS SYSIPFEPAV EPTRSESLSS  60
VSFSDFDCLS DEDLFEFDVS SFAFEQNQSE SFGFEAKPQK LDLIPSVATS SSSSLSSETE  120
SFLGFEAKPV IIGETASKTS QSSKKPSLKI AVPRKVELLQ FSKANPMVQG GSNQARDEQR  180
HYRGVRRRPW GKFAAEIRDP NRKGSRVWLG TFDTAIEAAR AYDEAAFKLR GSKAILNFPL  240
EAGKPRSLVA PADGKKRPRE EKEEENEVIV KKEKEAESDV SMWRDGPLTP SCWKGTWDSD  300
DTMGIFDVPL LPPLSPIPTL GFPQLMVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-27180240161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00377.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055447.10.0PREDICTED: ethylene-responsive transcription factor ERF105
TrEMBLA0A059C0F50.0A0A059C0F5_EUCGR; Uncharacterized protein
STRINGXP_010055447.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.15e-37ERF family protein