PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E00261.1.p | ||||||||
Common Name | EUGRSUZ_E00261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 31325.2 Da PI: 6.5071 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9e-16 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l +++++ G g+W+ +++ g++R++k+c++rw +yl Eucgr.E00261.1.p 18 KGPWSAEEDAKLSEYIEKEGHGRWSDLPKKAGLNRCGKSCRLRWINYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+ +++ + ++G++ W++Ia +++ gRt++++k++w++ Eucgr.E00261.1.p 71 RGNFSDEEEAMIINFHSLYGNK-WSKIATHLQ-GRTDNEIKNHWNT 114 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.741 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.4E-30 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-25 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.61E-10 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 27.615 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-16 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 71 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.51E-11 | 73 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 73 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MVRSPCCSGD HEAEGLKKGP WSAEEDAKLS EYIEKEGHGR WSDLPKKAGL NRCGKSCRLR 60 WINYLRPDIK RGNFSDEEEA MIINFHSLYG NKWSKIATHL QGRTDNEIKN HWNTRMKKKL 120 LRMGIDPNTH KPRTDHLNQA MNLSQLLGTG GGPHLGSPPL SSLENAIANA AELAKLQLQS 180 LLHQAVNHSS PWPSYGGGFG VIRGDDNGGL CGDACMIQPE NPLPQLVSAS PEGSTVKNQF 240 ESESLPICSD WPTQSQALTF VEDWEKLLEE DTSASFLREI LQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 16 | 120 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E00261.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010055297.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q8GWP0 | 3e-66 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | A0A059BZW2 | 0.0 | A0A059BZW2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010055297.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-70 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E00261.1.p |