PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E00037.2.p

Common Name

EUGRSUZ_E00037, LOC104443348

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 295aa MW: 31838.2 Da PI: 9.3135

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E00037.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt GG+lrnvPvGgg+rknkk+s Eucgr.E00037.2.p 37 PQEQLNCPRCNSNNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNVPVGGGSRKNKKVS 97 6899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	32	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDTAQWPSQD TRVVKGMEET SPNACNNRAM LEKRARPQEQ LNCPRCNSNN TKFCYYNNYS 60 LTQPRYFCKT CRRYWTDGGS LRNVPVGGGS RKNKKVSTSS TSSSPSASSR LPDLNPSSVI 120 SHFSAQNPKA GLLYEGQDLN LGFPGTQEYR ATIAQYVQVP KVDPETSSRG PDNNSSAPSS 180 ALELLRNSSS GMGSRGLSLP FLPANIQADS NVLYSSAGFN LQELKPSLGF SMDSRYASAH 240 GVVHQENGGK LLFPFGGMMK QLSSTSGSDQ VDHNGKGQSS SNAYWNGMLG GGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E00037.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010054989.1	0.0	PREDICTED: dof zinc finger protein DOF2.5 isoform X1
Refseq	XP_010054990.1	0.0	PREDICTED: dof zinc finger protein DOF2.5 isoform X1
Swissprot	Q9ZPY0	4e-58	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A059BZF1	0.0	A0A059BZF1_EUCGR; Uncharacterized protein
STRING	XP_010054989.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-56	Dof family protein

Link Out ? help Back to Top
Phytozome	Eucgr.E00037.2.p
Entrez Gene	104443348

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]