PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E00037.1.p | ||||||||
Common Name | EUGRSUZ_E00037, LOC104443348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Dof | ||||||||
Protein Properties | Length: 295aa MW: 31838.2 Da PI: 9.3135 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.7 | 2.9e-39 | 37 | 97 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt GG+lrnvPvGgg+rknkk+s Eucgr.E00037.1.p 37 PQEQLNCPRCNSNNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNVPVGGGSRKNKKVS 97 6899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 32 | 95 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.2E-33 | 39 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.975 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDTAQWPSQD TRVVKGMEET SPNACNNRAM LEKRARPQEQ LNCPRCNSNN TKFCYYNNYS 60 LTQPRYFCKT CRRYWTDGGS LRNVPVGGGS RKNKKVSTSS TSSSPSASSR LPDLNPSSVI 120 SHFSAQNPKA GLLYEGQDLN LGFPGTQEYR ATIAQYVQVP KVDPETSSRG PDNNSSAPSS 180 ALELLRNSSS GMGSRGLSLP FLPANIQADS NVLYSSAGFN LQELKPSLGF SMDSRYASAH 240 GVVHQENGGK LLFPFGGMMK QLSSTSGSDQ VDHNGKGQSS SNAYWNGMLG GGSW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E00037.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010054989.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5 isoform X1 | ||||
Refseq | XP_010054990.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5 isoform X1 | ||||
Swissprot | Q9ZPY0 | 4e-58 | DOF25_ARATH; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | A0A059BZF1 | 0.0 | A0A059BZF1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010054989.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2528 | 26 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 2e-56 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E00037.1.p |
Entrez Gene | 104443348 |
Publications ? help Back to Top | |||
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