PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D02111.1.p | ||||||||
Common Name | EUGRSUZ_D02111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 28742.2 Da PI: 8.4592 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.6e-20 | 113 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+++ta eAa+a+++a+ +l+g Eucgr.D02111.1.p 113 HYRGVRQRP-WGKFAAEIRDP---KrKGSRVWLGTYDTAIEAARAYDRAAFRLRG 163 7********.**********8...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 112 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-38 | 113 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.302 | 113 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-23 | 113 | 172 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.18E-31 | 113 | 171 | No hit | No description |
Pfam | PF00847 | 1.9E-14 | 113 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-13 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-13 | 153 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
DPDIFNFDLA SVPSQNPSDL FELEAKPEII DLTTPESFSS FTWNRESGCF FEFGSKTSVS 60 SAGSSLQGGS SQANRKPSLK ISLPNKVEWL HFNSGDQALA EVNAPVPEED HRHYRGVRQR 120 PWGKFAAEIR DPKRKGSRVW LGTYDTAIEA ARAYDRAAFR LRGSKAILNF PLEAGKSEPM 180 ASRDHKKRRH EEEAEAVTKR EKLAQESGER GYRTEVPLMS PSWTSFLQGD VKGMFNVPPL 240 SPLSPRLAFG FPQLTVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-30 | 112 | 178 | 4 | 70 | ATERF1 |
3gcc_A | 9e-30 | 112 | 178 | 4 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D02111.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053512.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5 | ||||
Swissprot | O80341 | 4e-69 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A059CHU1 | 0.0 | A0A059CHU1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010053512.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-54 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D02111.1.p |
Publications ? help Back to Top | |||
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