PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02105.1.p
Common NameEUGRSUZ_D02105, LOC104441939
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 288aa    MW: 31824.7 Da    PI: 7.4113
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02105.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.8e-19129183256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Eucgr.D02105.1.p 129 RKKLRLSKDQSAVLEESFREHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 183
                       788899***********************************************98 PP
2HD-ZIP_I/II128.43e-41129218191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+kev+eLr +l
  Eucgr.D02105.1.p 129 RKKLRLSKDQSAVLEESFREHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEIDCEFLKRCCENLTEENRRLQKEVQELR-AL 218
                       69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.1E-262101IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.5E-18104186IPR009057Homeodomain-like
SuperFamilySSF466891.42E-18119186IPR009057Homeodomain-like
PROSITE profilePS5007117.572125185IPR001356Homeobox domain
SMARTSM003893.4E-16127189IPR001356Homeobox domain
PfamPF000463.5E-16129183IPR001356Homeobox domain
CDDcd000866.09E-16129186No hitNo description
PRINTSPR000311.9E-5156165IPR000047Helix-turn-helix motif
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5165181IPR000047Helix-turn-helix motif
SMARTSM003406.6E-27185228IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-10185219IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:1.20.5.1706.8E-4189218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMVEREDLGL SLSLSFSDSS RPSQLGASPF GFNLYKPSHR DCETFASLDR ISEADARPSL  60
RGIDVNRPPP SAADCEEQEE AGVSSPNSTI SSVSGKRGER EMVSGGEDNE AERDCSRGGS  120
DEEDGENSRK KLRLSKDQSA VLEESFREHN TLNPKQKLAL AKQLGLRPRQ VEVWFQNRRA  180
RTKLKQTEID CEFLKRCCEN LTEENRRLQK EVQELRALKL SPQFYMHMPP PTTLTVCPNC  240
ERVGAAAPPL PSAGGGGRPA HHREPVPMIP WAARPGPVSH GALRPRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133SRKKLRL
2177185RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02105.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053507.10.0PREDICTED: homeobox-leucine zipper protein HAT4
SwissprotP466011e-100HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A059CHF50.0A0A059CHF5_EUCGR; Uncharacterized protein
STRINGXP_010053507.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-82homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]