PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02027.1.p
Common NameEUGRSUZ_D02027
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 337aa    MW: 39143 Da    PI: 7.1681
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.13.3e-4471171129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       +ppGfrFhPtdeelv++yL+kkv++k+++l +vik+vd+yk+ePwdL+                dkky+tg+r+nratk+g+Wkatg+dk+++
  Eucgr.D02027.1.p   7 VPPGFRFHPTDEELVDYYLRKKVASKRIDL-DVIKDVDLYKIEPWDLQ----------------DKKYPTGTRTNRATKAGFWKATGRDKAIY 82 
                       69****************************.9***************6................789************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Eucgr.D02027.1.p  83 L-KHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 117
                       *.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-535137IPR003441NAC domain
PROSITE profilePS5100548.4047137IPR003441NAC domain
PfamPF023658.2E-258116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQDKKYPTG  60
TRTNRATKAG FWKATGRDKA IYLKHSLIGM RKTLVFYKGR APNGQKSDWI MHEYRLETNE  120
NGTPQEEGWV VCRVFKKRMT SMRKIGEYES PCWYDDQVSF MSELDSPRRI SQPYPSPYHH  180
QYPCKQEMEL QYNMPPHDAF LQLPQLESPK VTQSTPPITC NSLMPYAYDR SSCSNFQSSN  240
LTQEEHIQQI HHLNMNSLFG NIPSEQVGDQ VTDWRVLDKF VASQLSHDNA PKENHYSNSS  300
TIYHVGEQVS IESKRPEVPQ EFASTSTSSC QIELWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-42714317171NO APICAL MERISTEM PROTEIN
1ut4_B3e-42714317171NO APICAL MERISTEM PROTEIN
1ut7_A3e-42714317171NO APICAL MERISTEM PROTEIN
1ut7_B3e-42714317171NO APICAL MERISTEM PROTEIN
3ulx_A3e-42613814169Stress-induced transcription factor NAC1
4dul_A3e-42714317171NAC domain-containing protein 19
4dul_B3e-42714317171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053433.10.0PREDICTED: NAC domain-containing protein 7 isoform X2
SwissprotQ9FWX21e-143NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A059CGY60.0A0A059CGY6_EUCGR; Uncharacterized protein
STRINGXP_010053432.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21112678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-143NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]