PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01775.1.p
Common NameEUGRSUZ_D01775, LOC104441682
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 320aa    MW: 34999.1 Da    PI: 4.8647
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01775.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-19121170255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Eucgr.D01775.1.p 121 KFRGVRRRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDQAAIQLRG 170
                       89*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.0E-30120178IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21121178IPR016177DNA-binding domain
PfamPF008475.5E-13121170IPR001471AP2/ERF domain
SMARTSM003802.7E-37121184IPR001471AP2/ERF domain
CDDcd000183.03E-30121178No hitNo description
PROSITE profilePS5103223.999121178IPR001471AP2/ERF domain
PRINTSPR003674.4E-10122133IPR001471AP2/ERF domain
PRINTSPR003674.4E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEATTCFVPP VKLTEHRTRA RLLSPEPADD PSIRPRVVRI SYTDGDATDS SSDEEDGPFE  60
CRRRRVKRFV HEIAIDPPCS RESHEVGKSR SLRSKLCGKS TGKPALRAGR CEMKSPAGVR  120
KFRGVRRRPW GKWAAEIRDP LRRVRLWLGT YDTAEEAAMV YDQAAIQLRG PDALTNFATP  180
PPLEVAAMSP PMPPAKGPGE ARSPTSVLRC LPDYAEDSQG SAGDESCASA NASEHAASFE  240
SLLPDDFFDF RSSAPSLFDE YASFGESMFK DDVVDAFMNP GEDFGFGFCS GSGSSCWTVD  300
DDHFQDIGDL FGSDPLLAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-181211771471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01775.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053170.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLA0A059CGU50.0A0A059CGU5_EUCGR; Uncharacterized protein
STRINGXP_010053170.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-59cytokinin response factor 2