PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D01698.1.p

Common Name

EUGRSUZ_D01698, LOC104441630

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 305aa MW: 32682.2 Da PI: 8.5734

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D01698.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	45	106	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt GG+lrn+PvGgg+rknk+sss Eucgr.D01698.1.p 45 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNIPVGGGSRKNKRSSS 106 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	39	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-33	47	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.04	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MDTAQWPQEI VVKPIEDIVT STCTAAATPK PSSSSVSERK PRPQKEQALN CPRCNSTNTK 60 FCYYNNYSLT QPRYFCKTCR RYWTDGGSLR NIPVGGGSRK NKRSSSSASS SSSSFNSSSK 120 KLPDLISTPA SNPNNKVTLH EGQDLNLAFP NPHHHDFKSI SELVQVPSLE ASKNHHISAN 180 SSSAGASMAP PQLSALELLS GITSRGSFSS FMSMPVHDPG SVYTPGLFAL PDFKPTLNFS 240 LDGLGSGGYR SLPSVQEGGT NGGRLLFPFE DLKPVSSTSD MEQNRGDQGD SNGYWSGMLG 300 GGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D01698.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN977016	1e-54	JN977016.1 Molineria latifolia clone CL27 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010053092.1	0.0	PREDICTED: dof zinc finger protein DOF1.8
Swissprot	Q8LAP8	5e-69	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A059CG34	0.0	A0A059CG34_EUCGR; Uncharacterized protein
STRING	XP_010053092.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-57	Dof family protein

Link Out ? help Back to Top
Phytozome	Eucgr.D01698.1.p
Entrez Gene	104441630

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]