PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D01671.1.p | ||||||||
Common Name | EUGRSUZ_D01671, LOC104441605 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 384aa MW: 42811.9 Da PI: 7.716 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.6 | 7e-51 | 14 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppGfrFhPt+eel+++yL+kk+++kk++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat+ g+Wkatg+dk Eucgr.D01671.1.p 14 PPGFRFHPTEEELLHYYLRKKMSNKKIDL-DVIRDVDLNKLEPWDIQErcKIGSgPQSDWYFFSHKDKKYPTGTRTNRATAVGFWKATGRDKI 105 9****************************.9***************963444442445*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++ +gl+ktLvfykgrap+g+k+dW+mheyrl Eucgr.D01671.1.p 106 IYG-GSSRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 141 **9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-57 | 7 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.38 | 13 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-27 | 14 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MDMNLSINGQ SQIPPGFRFH PTEEELLHYY LRKKMSNKKI DLDVIRDVDL NKLEPWDIQE 60 RCKIGSGPQS DWYFFSHKDK KYPTGTRTNR ATAVGFWKAT GRDKIIYGGS SRIGLRKTLV 120 FYKGRAPHGQ KSDWIMHEYR LDEGSNSSVG PSLVCESSPE DGWVVCRVFR KKSHQRSLES 180 PKSTSTSSMD TEMLMNASAD SSVLDQILSY MGRTNCESPE NYQAPINISS MQTQLIHGKF 240 LHLPRLDDSS HLGQETGLRT FYQKFDEIRI PGSDDPSSKH TSSDYEPKAG TAGINDWVAL 300 DRLVASQLNG QLEISAASKQ SPYPGAPNPV LAGPTPGDHQ VGQLSPLQLN RPNQIYSSES 360 SFDWSFGKSS SVTPSNPLHH LSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-48 | 10 | 173 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-48 | 10 | 173 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-48 | 10 | 173 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-48 | 10 | 173 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-48 | 10 | 173 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-48 | 10 | 173 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-48 | 10 | 173 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-48 | 10 | 173 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-48 | 10 | 173 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-48 | 10 | 173 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-48 | 10 | 173 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-48 | 10 | 173 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-48 | 10 | 173 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-48 | 10 | 173 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D01671.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ215846 | 0.0 | HQ215846.1 Eucalyptus gunnii wood-associated NAC domain transcription factor 1 (WND1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053059.1 | 0.0 | PREDICTED: NAC domain-containing protein 66 | ||||
Swissprot | Q84WP6 | 1e-107 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A059CG03 | 0.0 | A0A059CG03_EUCGR; Uncharacterized protein | ||||
STRING | XP_010053059.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-106 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D01671.1.p |
Entrez Gene | 104441605 |