PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D00665.1.p | ||||||||
Common Name | EUGRSUZ_D00665, LOC104441049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 344aa MW: 38224 Da PI: 8.9708 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.6 | 1.8e-51 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l pGfrFhPtdeelvv+yL kkv+ ++l++ ++i+e+++yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++ Eucgr.D00665.1.p 15 LLPGFRFHPTDEELVVQYLGKKVALEPLPV-SIIAEINLYKFDPWELPSKAIFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIF 106 579***************************.89***************7777799************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++ +vg+kk Lvfy+g+ pkg+ktdW+mheyr+ Eucgr.D00665.1.p 107 AStGKCKVGVKKALVFYRGKPPKGTKTDWIMHEYRF 142 9866778***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-62 | 5 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.099 | 15 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-26 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MASTNSPTSS QHLHLLPGFR FHPTDEELVV QYLGKKVALE PLPVSIIAEI NLYKFDPWEL 60 PSKAIFGEHE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIFASTG KCKVGVKKAL 120 VFYRGKPPKG TKTDWIMHEY RFTDGNSAPK PPKADSASKK GSLRLDDWVL CRIYKKSSPV 180 RLVEPRSENF APLNMNPPAS KGVNYSSTLP GNNDGAFFEG MLPETIHSTS ISHQLPFSTM 240 KPDVSISHSA MATSDESRRG CPAPVQYWSE DGSAISGKRY EGGHHDQNGG GNGMDDRNSF 300 VSLLHQIPQN SEPFHPHMFL ENPIGDGDFQ RQFQPLGMNW PNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-71 | 12 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-71 | 12 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-71 | 12 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-71 | 12 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-71 | 12 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-71 | 12 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-71 | 12 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-71 | 12 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-71 | 12 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-71 | 12 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-71 | 12 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-71 | 12 | 178 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-71 | 12 | 178 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-71 | 12 | 178 | 14 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D00665.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052353.1 | 0.0 | PREDICTED: NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 2e-91 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A059CDE9 | 0.0 | A0A059CDE9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052353.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-88 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D00665.1.p |
Entrez Gene | 104441049 |