PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D00652.1.p

Common Name

EUGRSUZ_D00652, LOC104441041

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 269aa MW: 29911.5 Da PI: 8.9745

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D00652.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116	1.6e-36	14	72	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ lkcprCdstntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ Eucgr.D00652.1.p 14 PSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKRP 72 67899***********************************************9876664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-23	15	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	17	70	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.643	18	72	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	20	56	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MKRPLQQQNQ LNQPSEPLKC PRCDSTNTKF CYYNNYNKSQ PRHFCKACKR HWTKGGTLRN 60 VPVGGGRKNK RPKPSHPSSA AANSSSAASR RILTANTTTA SDAPVQAREK IIRGLQSEVC 120 DQKDLNEMFY QAFLFQPPPR ENLCSNSNIF LGSSLSTPES ANLHFPLLQS SSPLVRNTCS 180 STPISSFGFS STVDGQTREY KPVLEESSTI ITTSVMPTST CTQPWNFGNI GMEVMNNTSH 240 NWVWDDMDKL VSTNLSLPDW DNVETKPQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D00652.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010052346.1	0.0	PREDICTED: dof zinc finger protein DOF1.8 isoform X1
Refseq	XP_010052347.1	0.0	PREDICTED: dof zinc finger protein DOF1.8 isoform X2
TrEMBL	A0A059CDL1	0.0	A0A059CDL1_EUCGR; Uncharacterized protein
STRING	XP_010052346.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	2e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Eucgr.D00652.1.p
Entrez Gene	104441041