PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D00607.1.p

Common Name

EUGRSUZ_D00607, LOC104440999

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 295aa MW: 31106.9 Da PI: 9.6835

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D00607.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	32	91	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprCds+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+s+ Eucgr.D00607.1.p 32 HQPQKCPRCDSMNTKFCYYNNYSLSQPRYFCKTCRRYWTHGGTLRNVPVGGGCRKAKRSK 91 6889*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-33	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.04	35	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-23	36	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MEQESKPPPL DRRPTSRPAQ PDGQQQPPPP HHQPQKCPRC DSMNTKFCYY NNYSLSQPRY 60 FCKTCRRYWT HGGTLRNVPV GGGCRKAKRS KSSSSSSSTS ASASSGDSLT PHSSLQVLPQ 120 SLRDVAAGNL APPPAAAAGE GPLGYSFYPG GGFLSSLAAV QSINQSQPFN IGGATTSNNN 180 SSNNLGFFQG FGGLASLSSS HHHQQIHQQA QFLQSDWSHG FGMGSNANTG SSSSNNNSPT 240 ISHVHHQHGN LWSGSTSAGI SGHGGGESNR IGLNVNRPSD HHHLPHLPGF GPPP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D00607.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010052293.1	0.0	PREDICTED: dof zinc finger protein DOF5.6
Refseq	XP_018727391.1	0.0	PREDICTED: dof zinc finger protein DOF5.6
TrEMBL	A0A059CE52	0.0	A0A059CE52_EUCGR; Uncharacterized protein
STRING	XP_010052293.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15986	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	6e-30	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Eucgr.D00607.1.p
Entrez Gene	104440999