PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D00594.1.p | ||||||||
Common Name | EUGRSUZ_D00594, LOC104442637 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 33563.1 Da PI: 9.2521 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.8 | 1.1e-32 | 53 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lppG++F+Ptd e++ e+L++k+ g+ + +++i++++ i+ ++P++Lp ++++ + +fF++ +k+yatg+rk+r ++ Eucgr.D00594.1.p 53 LPPGVKFDPTDLEIL-EHLEAKIMGDVrkihflI--DQFIPTLEgddgICCTHPERLP-GISKDGQIRHFFHRPSKAYATGTRKRRRVHknad 141 79************9.99******9995554321..233444423345**********.666667778******************6333455 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ ++ ++g kk+Lv+y gr++k+ekt+Wvmh+y+l Eucgr.D00594.1.p 142 esETRWHKTGKTRSVLA-GRVVIGFKKILVLYnnYGRQRKPEKTNWVMHQYHL 193 55889************.999***********65579**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-36 | 41 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.244 | 53 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-15 | 54 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MMWQKEDARA IIPSTYNPRD DDNSLLPTMT CPSCGHSVPM FYQRGIVHAL VGLPPGVKFD 60 PTDLEILEHL EAKIMGDVRK IHFLIDQFIP TLEGDDGICC THPERLPGIS KDGQIRHFFH 120 RPSKAYATGT RKRRRVHKNA DESETRWHKT GKTRSVLAGR VVIGFKKILV LYNNYGRQRK 180 PEKTNWVMHQ YHLGKSEEER DGELVVSKVF YQTQPRQPSS TNFKYPKDTM PKSAQSWNEN 240 DHVSRSSINL IGYYSNPSCG GSYDQLDIPS FAVHGEAASL VPLTEDLNKG RLVKS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 134 | RKRRR |
2 | 131 | 135 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D00594.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010054344.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 3e-96 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A059CCV5 | 0.0 | A0A059CCV5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010054344.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-98 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D00594.1.p |
Entrez Gene | 104442637 |
Publications ? help Back to Top | |||
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