PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D00593.1.p | ||||||||
Common Name | EUGRSUZ_D00593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 133aa MW: 14772.6 Da PI: 4.1094 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.3 | 2e-08 | 68 | 123 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpk 49 lp+G++F+Ptd e++ e+L++k+ g+ + +++i++++ i++++P++Lp Eucgr.D00593.1.p 68 LPAGVKFDPTDLEIL-EHLEAKIMGNVrkihflI--DQFIPTLEgddgICSTHPERLPG 123 799***********9.99*******995554321..233444423345*********93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-8 | 60 | 125 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.576 | 68 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MTWQTEDGRA IIPASYNPRD EDEDDDNTLL PTIACPSCGH SFPLFDQDLY NYEIIVVKRE 60 IVHDLVGLPA GVKFDPTDLE ILEHLEAKIM GNVRKIHFLI DQFIPTLEGD DGICSTHPER 120 LPGNSGITLP SE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D00593.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052265.1 | 7e-87 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 4e-27 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A059CDD3 | 2e-92 | A0A059CDD3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052265.1 | 3e-86 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21083 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 2e-29 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D00593.1.p |
Publications ? help Back to Top | |||
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