PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D00592.1.p | ||||||||
Common Name | EUGRSUZ_D00592 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 230aa MW: 26457.2 Da PI: 9.1878 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.4 | 7.3e-33 | 57 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+Ptd+e++ e+L++k+ g+ + +++i++++ i+ ++P++Lp v+++ + +fF++ +++yatg+rk+r Eucgr.D00592.1.p 57 LPAGVKFDPTDQEIL-EHLEAKIMGDVrkihflI--DQFIPTLEgdegICCTHPERLP-GVSKDGQIRHFFHRPARAYATGTRKRRRvhnnad 145 799***********9.99******9995554321..233444323344**********.555666777******************6355555 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++vl+ ++ ++g kk+Lv+y gr++k+ekt+Wvmh+y+l Eucgr.D00592.1.p 146 ERETRWHKTGKTRSVLA-GRVVKGFKKILVLYnnYGRQRKPEKTNWVMHQYHL 197 44899************.999***********65579**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-36 | 48 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.948 | 57 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-16 | 58 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTWQMEDAGA IIPPTHNPRD EDEDGNNALL PTIACPSCGH SFPLFDQREI VHDLVGLPAG 60 VKFDPTDQEI LEHLEAKIMG DVRKIHFLID QFIPTLEGDE GICCTHPERL PGVSKDGQIR 120 HFFHRPARAY ATGTRKRRRV HNNADERETR WHKTGKTRSV LAGRVVKGFK KILVLYNNYG 180 RQRKPEKTNW VMHQYHLGKS EEERDGELVV SKVFHQTQPR RPMLIYKVR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | RKRRR |
2 | 135 | 139 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D00592.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052264.1 | 1e-167 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 2e-97 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A059CD74 | 1e-171 | A0A059CD74_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052264.1 | 1e-167 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-100 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D00592.1.p |
Publications ? help Back to Top | |||
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