PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D00591.1.p | ||||||||
Common Name | EUGRSUZ_D00591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 34277.7 Da PI: 6.9589 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.3 | 3.8e-33 | 57 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+e++ e+L++k+ g+ + +++i++++ i+ ++P++Lp v+++ + +fF++ +k+yatg+rk+r ++ Eucgr.D00591.1.p 57 LPAGVKFDPTDQEIL-EHLEAKIMGDArkihflI--DQFIPTLEgddgICCTHPERLP-GVSKDGQIRHFFHRPSKAYATGTRKRRRVQknmd 145 799***********9.99******9995654321..233444423345**********.555666777******************6333444 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Eucgr.D00591.1.p 146 etETRWHKTGKTRPVLA-GGAVKGFKKILVLYinYGRQRKPEKTNWVMHQYHL 197 44789************.9*************87789**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-37 | 49 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.596 | 57 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-15 | 58 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MTWQTEDARA IIPPTYNPRD EDENDDNTLL PTIVCPSCGH SFPLVDQREI VHDLVGLPAG 60 VKFDPTDQEI LEHLEAKIMG DARKIHFLID QFIPTLEGDD GICCTHPERL PGVSKDGQIR 120 HFFHRPSKAY ATGTRKRRRV QKNMDETETR WHKTGKTRPV LAGGAVKGFK KILVLYINYG 180 RQRKPEKTNW VMHQYHLGKN EEERDGELVV SKVFYQTQPR QPSSTTVKEP KDKTPKSDQS 240 LHENVHVPRS SINVMEYYGN TPYSESYDQL IIPDFVDQGE AASLVPLVED SSKGKLVKYQ 300 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | RKRRR |
2 | 135 | 139 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D00591.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052263.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 | ||||
Refseq | XP_018727657.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-101 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A059CCL2 | 0.0 | A0A059CCL2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052263.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-103 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D00591.1.p |
Publications ? help Back to Top | |||
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