PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D00509.1.p

Common Name

EUGRSUZ_D00509, LOC104440911

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 261aa MW: 28870 Da PI: 9.1654

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D00509.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.6e-13	71	117	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs +++Lr l+P K++Ka+ L +++e +k+L Eucgr.D00509.1.p 71 RNHSEAERRRRERINSHLATLRGLVPGE-----DKMDKATLLAHVIEEVKEL 117 58***********************7.....7***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.377	68	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	71	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-13	71	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-13	72	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.5E-11	74	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	3.49E-6	156	228	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MALYSNYCDG LHGSDPHQMF DPLLRANGSA PAMDTPQSLV LDGEKSELVI KAPNRAAKKN 60 VPEEKALAAL RNHSEAERRR RERINSHLAT LRGLVPGEDK MDKATLLAHV IEEVKELKKT 120 ALEASKGLLV PLDADEVKVE PLDDATGNGT FSFKASICCQ YRPELLSDLR QAINALHLKI 180 VKAEISTLES RLRNEFIFLS GKEQFSYNWS LQRQLLASSI RQALCSVLAK TSISSEYSPR 240 TTLPSKRRRV SFLNSSSPSL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	81	ERRRRE
2	245	249	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D00509.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010052204.1	0.0	PREDICTED: transcription factor bHLH30
TrEMBL	A0A059CCE9	0.0	A0A059CCE9_EUCGR; Uncharacterized protein
STRING	XP_010052204.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15581	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-36	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.D00509.1.p
Entrez Gene	104440911