PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D00268.3.p | ||||||||
Common Name | EUGRSUZ_D00268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 434aa MW: 49577.4 Da PI: 7.6135 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.6 | 8.6e-17 | 32 | 124 | 2 | 100 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 fk+ s +l+sg l +pk+f++++g++ s + l+ + g +W vkl +k++++ ++l kGW++F + + g +vFk++g+s f + Eucgr.D00268.3.p 32 FKIV-LSRALESGKLGIPKSFLRRYGKD--LSGLVLLKVPGGSTWPVKL--EKSDDGkVWLWKGWRGFMEHYSIGHGHLLVFKYEGDSVF--H 117 4443.488899999***********977..7779***************..8887777****************************9999..9 PP EEEE-SS CS B3 94 vkvfrks 100 v +f+ks Eucgr.D00268.3.p 118 VIIFDKS 124 9999985 PP | |||||||
2 | B3 | 64.3 | 1.9e-20 | 198 | 290 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv +++ + +++ l++p++f+ +h +k +k++ s rsW+vkl r + + l++GW++F+++n+L +gD +vF+l++r++ ++ Eucgr.D00268.3.p 198 FFKVVIQPTYVRKS-LTIPREFFIKHVQK---NKQIATLRYSDRSWQVKL--RTHEHTACLSTGWSSFARENDLLVGDCCVFELIDRDDIVFR 284 89999999999998.***********544...23577777899*******..999999***************************99999999 PP EEEE-S CS B3 94 vkvfrk 99 v++fr+ Eucgr.D00268.3.p 285 VSIFRS 290 999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.55E-24 | 25 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-24 | 26 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.73E-19 | 29 | 122 | No hit | No description |
PROSITE profile | PS50863 | 13.62 | 30 | 124 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-15 | 31 | 124 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-14 | 32 | 123 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-26 | 190 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-23 | 192 | 291 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.38 | 197 | 291 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.92E-17 | 197 | 289 | No hit | No description |
Pfam | PF02362 | 1.2E-17 | 198 | 290 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-18 | 198 | 291 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-9 | 327 | 423 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-9 | 328 | 423 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.99E-7 | 333 | 423 | No hit | No description |
SMART | SM01019 | 0.0033 | 334 | 425 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.051 | 368 | 425 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MGRRSRHRRR REGGGAEPEM DPGSPPSSPH FFKIVLSRAL ESGKLGIPKS FLRRYGKDLS 60 GLVLLKVPGG STWPVKLEKS DDGKVWLWKG WRGFMEHYSI GHGHLLVFKY EGDSVFHVII 120 FDKSASEIDY PSSIESDMSS PEEEFLSRKE EDVVEIKDSE GSVPCSQPSS YRSSREYGVP 180 SHLAAFELAS EFKSDHPFFK VVIQPTYVRK SLTIPREFFI KHVQKNKQIA TLRYSDRSWQ 240 VKLRTHEHTA CLSTGWSSFA RENDLLVGDC CVFELIDRDD IVFRVSIFRS DGQIQTEQSQ 300 CQEHPSESAF HTSPCLSPVI AHERACEFES EYPFCNVVIS PSHIKRQTVF IKTYIQKDHQ 360 MVNVVYLGRS FEVNLRVYRH LYIAFLGVGW SALAREAHLR KGDVCMFELL DRDNIVLRVS 420 VFSSANKEVI CIE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 11 | RRSRHRRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D00268.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052027.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A059CD82 | 0.0 | A0A059CD82_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052027.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-23 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D00268.3.p |