PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00268.1.p
Common NameEUGRSUZ_D00268
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 451aa    MW: 51555.7 Da    PI: 7.8276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00268.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59.2e-17321242100
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       fk+   s +l+sg l +pk+f++++g++   s  + l+ + g +W vkl  +k++++ ++l kGW++F +   +  g  +vFk++g+s f  +
  Eucgr.D00268.1.p  32 FKIV-LSRALESGKLGIPKSFLRRYGKD--LSGLVLLKVPGGSTWPVKL--EKSDDGkVWLWKGWRGFMEHYSIGHGHLLVFKYEGDSVF--H 117
                       4443.488899999***********977..7779***************..8887777****************************9999..9 PP

                       EEEE-SS CS
                B3  94 vkvfrks 100
                       v +f+ks
  Eucgr.D00268.1.p 118 VIIFDKS 124
                       9999985 PP
2B364.22e-20198290199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv +++ + +++ l++p++f+ +h +k   +k++     s rsW+vkl  r +  +  l++GW++F+++n+L +gD +vF+l++r++  ++
  Eucgr.D00268.1.p 198 FFKVVIQPTYVRKS-LTIPREFFIKHVQK---NKQIATLRYSDRSWQVKL--RTHEHTACLSTGWSSFARENDLLVGDCCVFELIDRDDIVFR 284
                       89999999999998.***********544...23577777899*******..999999***************************99999999 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v++fr+
  Eucgr.D00268.1.p 285 VSIFRS 290
                       999986 PP
3B3376.1e-12347440298
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       + v + ++  +++ +++p +f++++ +k ++  ++      grs+evkl + ++    +l+ GW+  +++ +L+egD+++F+l +r++  l+v
  Eucgr.D00268.1.p 347 CNVVILPYQIERQTVTIPWQFIKTYIQKDHQ--MVN-VVYLGRSFEVKLLVYRHLHIAILGIGWSALAREAHLREGDVCMFELLDRDNIVLRV 436
                       5666678999999************444333..444.44689*******99999999*************************99999998999 PP

                       EEE- CS
                B3  95 kvfr 98 
                       +vf+
  Eucgr.D00268.1.p 437 SVFS 440
                       9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.65E-2425124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-2426124IPR015300DNA-binding pseudobarrel domain
CDDcd100173.84E-1929122No hitNo description
PROSITE profilePS5086313.6230124IPR003340B3 DNA binding domain
SMARTSM010191.1E-1531124IPR003340B3 DNA binding domain
PfamPF023625.3E-1432123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-26190292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-23192292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.38197291IPR003340B3 DNA binding domain
CDDcd100171.74E-17197289No hitNo description
PfamPF023621.3E-17198290IPR003340B3 DNA binding domain
SMARTSM010192.4E-18198291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-14339440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-13340440IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-9346440IPR003340B3 DNA binding domain
SMARTSM010191.8E-6346442IPR003340B3 DNA binding domain
PROSITE profilePS5086310.236346442IPR003340B3 DNA binding domain
CDDcd100171.48E-7362440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGRRSRHRRR REGGGAEPEM DPGSPPSSPH FFKIVLSRAL ESGKLGIPKS FLRRYGKDLS  60
GLVLLKVPGG STWPVKLEKS DDGKVWLWKG WRGFMEHYSI GHGHLLVFKY EGDSVFHVII  120
FDKSASEIDY PSSIESDMSS PEEEFLSRKE EDVVEIKDSE GSVPCSQPSS YRSSREYGVP  180
SHLAAFELAS EFKSDHPFFK VVIQPTYVRK SLTIPREFFI KHVQKNKQIA TLRYSDRSWQ  240
VKLRTHEHTA CLSTGWSSFA RENDLLVGDC CVFELIDRDD IVFRVSIFRS DGVSPAAAAR  300
RRRRQIQTEQ SQCQEHPSES AFHTSPCLSP VIAHERACEF ESEYPFCNVV ILPYQIERQT  360
VTIPWQFIKT YIQKDHQMVN VVYLGRSFEV KLLVYRHLHI AILGIGWSAL AREAHLREGD  420
VCMFELLDRD NIVLRVSVFS SANKEVISIE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211RRSRHRRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00268.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052029.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A059CBR10.0A0A059CBR1_EUCGR; Uncharacterized protein
STRINGXP_010052028.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-23B3 family protein