PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D00267.1.p | ||||||||
Common Name | EUGRSUZ_D00267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 187aa MW: 21054.3 Da PI: 9.5047 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.8 | 1.3e-15 | 21 | 111 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 fk+ sd+l sg l +p++f++++g+ s l+ + g W ++l +k+ ++ ++l+kGW+eF + + g +vFk++g+s+f + Eucgr.D00267.1.p 21 FKII-LSDTLDSGKLGIPRRFLKKYGNH--LSSLAFLKVSLGSNWPIEL--KKCNNGtVWLQKGWREFMEYYSIGHGHLIVFKYEGDSTF--R 106 4444.5999****************865..777999999**********..66555559***************************9999..6 PP EEEE- CS B3 94 vkvfr 98 +f+ Eucgr.D00267.1.p 107 AIIFD 111 66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.5E-23 | 13 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-22 | 17 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.58E-17 | 18 | 111 | No hit | No description |
PROSITE profile | PS50863 | 13.14 | 19 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-13 | 20 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 21 | 111 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MACCRCCCRQ REDERAGPHF FKIILSDTLD SGKLGIPRRF LKKYGNHLSS LAFLKVSLGS 60 NWPIELKKCN NGTVWLQKGW REFMEYYSIG HGHLIVFKYE GDSTFRAIIF DKSTSEIDYS 120 SSSGGSNPGP VFRGPTHPRP LTRLELANKF ESEHPFFKVV MPPSSMKTSL VKFCFDAFVG 180 SVKGQL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D00267.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065668.1 | 5e-53 | PREDICTED: B3 domain-containing protein REM13 isoform X2 | ||||
TrEMBL | A0A059CBY5 | 1e-136 | A0A059CBY5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052028.1 | 9e-52 | (Eucalyptus grandis) | ||||
STRING | XP_010065667.1 | 9e-52 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-23 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D00267.1.p |