PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D00264.2.p | ||||||||
Common Name | EUGRSUZ_D00264, LOC104440759 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ARF | ||||||||
Protein Properties | Length: 830aa MW: 91506.1 Da PI: 6.6632 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.4 | 1.3e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++ + +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ Eucgr.D00264.2.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPAQ-ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 216 99***********************9*****97777664.9************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++v+r+ Eucgr.D00264.2.p 217 EKNQLLLGVRRA 228 89999****997 PP | |||||||
2 | Auxin_resp | 118.7 | 4.6e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k Eucgr.D00264.2.p 253 AAHAAATNSRFTIFYNPRASPSEFVISLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPVRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-48 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-41 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.86E-21 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 1.7E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.2E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.435 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.0E-34 | 253 | 336 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 21.181 | 761 | 829 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 830 aa Download sequence Send to blast |
MRLSSAGFSP QAQEGEKRVL NSELWHACAG PLVSLPAIGS RVVYFPQGHS EQVAASTNQE 60 VDAQIPNYPS LPPQLVCQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEA YLPAELGSPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSL QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGVRRANR PQTVMPSSVL 240 SCDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVISL AKYIKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIC DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPPG LPSYGLRDDD MGIASPSMWL RDGDRGMQSL NFQGMGLTPW 420 LQPRLDASML GLQPDMYQAM AAAALQEMRA VDHSKLATAS LMPVQHVQNI TSASASLMPS 480 QMLISTQPQQ SLLQGSRESP HHSVSQDQVQ SHLLQRQLQH QNSFTNQQQP QQEQLRQQLV 540 NQEQIPSASS PSQFALASQS HTASLQTMPS LCQQLSFSDS TGNPVTSPVV SPLQTLLGSF 600 TQDGSTHHLN LPRTNSSVSP SSWPSKRAAI ESLVPSGPSQ RVLPQMDQLG PPQNNLSPSS 660 VSLPPFPGRE CLDQEVTDVQ SHLLFGVNLE PSSLLMQNGI SSLRAVGSES DSTSMPFPSN 720 YISNSGADFA PNPSVAPPGG IDDSGFLQSP ENLNQVNVPT RTFVKVYKSG SFGRSLDITK 780 FSSYNELRSE LARMFSLEGQ LEDPVRSGWQ LVFVDRENDS LLLGDGPWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 13 | 357 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D00264.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052021.1 | 0.0 | PREDICTED: auxin response factor 6 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | A0A059CBQ7 | 0.0 | A0A059CBQ7_EUCGR; Auxin response factor | ||||
TrEMBL | A0A059CCA7 | 0.0 | A0A059CCA7_EUCGR; Auxin response factor | ||||
STRING | XP_010052021.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D00264.2.p |
Entrez Gene | 104440759 |
Publications ? help Back to Top | |||
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