PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00264.1.p
Common NameEUGRSUZ_D00264, LOC104440759
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 898aa    MW: 99039.5 Da    PI: 6.4757
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00264.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23127228199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae+       +++++ + +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Eucgr.D00264.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPAQ-ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 216
                       99***********************9*****97777664.9************************************************..88 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++v+r+
  Eucgr.D00264.1.p 217 EKNQLLLGVRRA 228
                       89999****997 PP
2Auxin_resp118.65.1e-39253336183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  Eucgr.D00264.1.p 253 AAHAAATNSRFTIFYNPRASPSEFVISLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPVRWPNSHWRSVK 336
                       79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-21126227No hitNo description
PfamPF023621.9E-21127228IPR003340B3 DNA binding domain
SMARTSM010197.2E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435127229IPR003340B3 DNA binding domain
PfamPF065074.4E-34253336IPR010525Auxin response factor
PROSITE profilePS5174522.718761845IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MRLSSAGFSP QAQEGEKRVL NSELWHACAG PLVSLPAIGS RVVYFPQGHS EQVAASTNQE  60
VDAQIPNYPS LPPQLVCQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEA YLPAELGSPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSL QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGVRRANR PQTVMPSSVL  240
SCDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVISL AKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIC DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSYGLRDDD MGIASPSMWL RDGDRGMQSL NFQGMGLTPW  420
LQPRLDASML GLQPDMYQAM AAAALQEMRA VDHSKLATAS LMPVQHVQNI TSASASLMPS  480
QMLISTQPQQ SLLQGSRESP HHSVSQDQVQ SHLLQRQLQH QNSFTNQQQP QQEQLRQQLV  540
NQEQIPSASS PSQFALASQS HTASLQTMPS LCQQLSFSDS TGNPVTSPVV SPLQTLLGSF  600
TQDGSTHHLN LPRTNSSVSP SSWPSKRAAI ESLVPSGPSQ RVLPQMDQLG PPQNNLSPSS  660
VSLPPFPGRE CLDQEVTDVQ SHLLFGVNLE PSSLLMQNGI SSLRAVGSES DSTSMPFPSN  720
YISNSGADFA PNPSVAPPGG IDDSGFLQSP ENLNQVNVPT RTFVKVYKSG SFGRSLDITK  780
FSSYNELRSE LARMFSLEGQ LEDPVRSGWQ LVFVDRENDS LLLGDGPWPE FVNSVWCIKI  840
LSPQEVQQMG KQDLELLNSI PVQRHSNGGC DEFTNRQDSR TINSGIPSVG SLDYGTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611335743388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00264.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052021.10.0PREDICTED: auxin response factor 6
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A059CBQ70.0A0A059CBQ7_EUCGR; Auxin response factor
STRINGXP_010052021.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]