PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00042.1.p
Common NameEUGRSUZ_D00042
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 250aa    MW: 28722.1 Da    PI: 6.0472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.8e-151865148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd++lv ++k++G  +W+  a+  g+ Rt+k+c++rw +yl
  Eucgr.D00042.1.p 18 KGAWSAEEDQKLVTYIKRYGIWNWTHMAKPAGLARTGKSCRLRWMNYL 65
                      79******************99************************97 PP
2Myb_DNA-binding50.74.2e-1672114246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g+ T+eE+e ++ +++ lG++ W++Ia++++ gRt++++k++w++
  Eucgr.D00042.1.p  72 GNITKEEEETIIALHRVLGNR-WAAIAARLP-GRTDNEIKNYWNT 114
                       678******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3881365IPR017930Myb domain
SuperFamilySSF466893.67E-2916112IPR009057Homeodomain-like
SMARTSM007178.1E-111767IPR001005SANT/Myb domain
PfamPF002493.8E-131865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-231972IPR009057Homeodomain-like
CDDcd001671.79E-92065No hitNo description
PROSITE profilePS5129425.18466120IPR017930Myb domain
SMARTSM007171.2E-1570118IPR001005SANT/Myb domain
PfamPF002492.1E-1472114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2573120IPR009057Homeodomain-like
CDDcd001673.48E-1175116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MARYPRNDKS NNETTLKKGA WSAEEDQKLV TYIKRYGIWN WTHMAKPAGL ARTGKSCRLR  60
WMNYLRPNIK HGNITKEEEE TIIALHRVLG NRWAAIAARL PGRTDNEIKN YWNTRLRKRL  120
SEEKFCLQNT RNDVNLHTDG KDISFHPLND SPNATNLGLD YQIPTTNADN PCPSVGVYDE  180
KPWSYDRCSS QEYGNGEGES LWKQVLAVED FYIEGDSSIC APNQELIMPI FTDFASSYDD  240
FFLDLWGES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30161205108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728065.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A059CBD00.0A0A059CBD0_EUCGR; Uncharacterized protein
STRINGXP_010051856.11e-154(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-50myb domain protein 15