PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00033.1.p
Common NameEUGRSUZ_D00033
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 880aa    MW: 99649.7 Da    PI: 8.9952
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.23.7e-25194301191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkw 76 
                       +fY+eYAk+vGF   +++s++s+ +g++++++f C+++g+++e   +                 +++ r++r  ++t+Cka ++vk++kdg+w
  Eucgr.D00033.1.p 194 SFYREYAKSVGFAAIIKASRRSRISGKFIDAKFACTRYGNKREPAVDavaepisttdimaipvkKKRGRTNRFGSKTDCKAGMHVKRRKDGRW 286
                       5****************************************9999999**************99899999*********************** PP

              FAR1  77 evtkleleHnHelap 91 
                       ++++l +eHnHe++p
  Eucgr.D00033.1.p 287 VIHSLIKEHNHEIFP 301
                       ************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-23194301IPR004330FAR1 DNA binding domain
PfamPF105514.5E-30420513IPR018289MULE transposase domain
PROSITE profilePS5096610.299698736IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-7706732IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-6711738IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MATSLFTAAL LSPCSAAFDL TKFVFSDVGH RNLGNSRPVR GKVAGIRPGE APAGVRFPPR  60
AAAAAAQFAN FSLQHFVRHL SVVLSKRVLQ EKNSFSMRID LGQPLGGRHK EATLLNANGD  120
TIHCSDEGHV GDGHVIDPPM VSEVEREKDG PNLGRRLLDN REKNYATDGV SGNSSKNTEP  180
HDGMEFESKE EAFSFYREYA KSVGFAAIIK ASRRSRISGK FIDAKFACTR YGNKREPAVD  240
AVAEPISTTD IMAIPVKKKR GRTNRFGSKT DCKAGMHVKR RKDGRWVIHS LIKEHNHEIF  300
PGEAYYLRRH RDSYQGDSHG DTLHAIRART KKIYDSMTRQ SSGCKKSQSQ KGGLRSQPKN  360
DQHLRLDEGD IQLMLDHFML MQDQNPNFFY AIDLSPEQRL RNVFWVDAKG RIDYGNFGDV  420
VFFDTTYIRD EYRLPFAPFI GVNHHCQSFL LGCAFLADET KSTYVWLMRA WRRAMGGHAP  480
QVILTDQEEA LKEAIAEVLP ESQHCFCLWQ ILSKVPEKVS YMINQDDNFT KKFHKCISKS  540
CTAEQFEKRW RKIVDKFNLG DNSWFRSAYE DRHRWAPTYM KGIFLAGMST VERSDSTISF  600
LDKHVQRKTT FKEFLAQYKT ILQEKYEEEA KADFESWHKQ PGLKSPSPFG KQMAATYTHA  660
VFKKFQVEVL GVVACHPRKE SEDGDIQSFK VQDFVENRDL IVGRSERTLD ISCSCRSFEL  720
NGFLCRHAMI VLQISGLHNV PSQYILRRWT KDAKSIALSR QSSSIILSRI DRYSDLCRQA  780
FYLGDEGSLS QESYAIASAA LEEALRKCES INNSTQSMDS NSPRLGLQDL EDVNKGNKTS  840
KRDKKNSSSK EGEGSSSLEA PALECYDAQE SMRGIIWSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00033.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051845.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1
RefseqXP_010051846.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1
TrEMBLA0A059CCJ60.0A0A059CCJ6_EUCGR; Uncharacterized protein
STRINGXP_010051845.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein