PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C03830.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 23543.5 Da PI: 9.1364 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72 | 5e-23 | 9 | 51 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 krien++ rqvtfsk rng+lKKA+ELSvLC+aeva+iif++ Eucgr.C03830.2.p 9 KRIENDTSRQVTFSKGRNGLLKKAFELSVLCNAEVALIIFGQA 51 79**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.7E-21 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.357 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-20 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVRGKTHMKR IENDTSRQVT FSKGRNGLLK KAFELSVLCN AEVALIIFGQ ALRVLELDET 60 VGFPPHFCSS SLVTHRLCSA PEAPTPLLLG PPLLHRRCNQ TPEATIPAAT LLLAVSDDPT 120 PAVARPDAVA PKTSDRRLCW AIEAPTPLLL GAKMGMMXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XIKMHPGREL STG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C03830.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF086642 | 4e-60 | AF086642.1 Eucalyptus globulus subsp. globulus putative MADS box transcription factor ETL mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A059CVG3 | 1e-109 | A0A059CVG3_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010051590.1 | 1e-104 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 3e-24 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C03830.2.p |