PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03658.1.p
Common NameEUGRSUZ_C03658
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 364aa    MW: 38986.6 Da    PI: 9.9798
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03658.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-13173217347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
  Eucgr.C03658.1.p 173 PWTEEEHRTFLVGLEKLGKGDWRGISRSYVTTRTPAQVASHAQKY 217
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.109.7E-46583IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.5326782IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.925166222IPR017930Myb domain
SuperFamilySSF466898.22E-17167221IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17169221IPR006447Myb domain, plants
SMARTSM007177.9E-10170220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10170217IPR009057Homeodomain-like
PfamPF002494.3E-11173217IPR001005SANT/Myb domain
CDDcd001675.19E-9173218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSIQSSSFLV HPVSIIYTSQ THIHCTLSLS LSLSLSLSLS EFSLCLSEFG VCGTSLVCES  60
VWAKMGRKCS HCGNIGHNSR TCTVTYSSSA TVGFDSGGLR LFGVQLDISP CSSSLAIKKS  120
FSMDCLPFTS SPASSSSLSS SRISIGENSD KASLGYLSDG LLGRSQEKKK GVPWTEEEHR  180
TFLVGLEKLG KGDWRGISRS YVTTRTPAQV ASHAQKYFLR QVSFNKKKRR SSLFDMVDVK  240
TAAGDRLGSL TAKPSESVPN CKMGTLMSHL QVHDARTTQL FTALGSSKED GKLNVRESVR  300
MMTGSSSHGL ISSSQKPSNA PKSIGVLPNS GLDLELKLAV SRPLERKKPS IVAPFFVGPL  360
AVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03658.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049555.20.0PREDICTED: uncharacterized protein LOC104438169
TrEMBLA0A059CUS80.0A0A059CUS8_EUCGR; Uncharacterized protein
STRINGXP_010049555.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54962747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-58MYB_related family protein