PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C03554.1.p | ||||||||
Common Name | EUGRSUZ_C03554, LOC104438144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 304aa MW: 33786.4 Da PI: 8.9977 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed +lvd+++ +G g W+ +++ g++R++k+c++rw++yl Eucgr.C03554.1.p 14 RGAWTVQEDRILVDYIQSHGEGGWRNLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Eucgr.C03554.1.p 67 RGNITADEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.78 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.64E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.863 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-25 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.51E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGRSPCCAKV GLNRGAWTVQ EDRILVDYIQ SHGEGGWRNL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TADEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT IVSKKVKHQP 120 KPSKETKLTK SKVIAMSRPA TQVVRTKALK CSRVLFLNPP QARPQVMQQQ QHRQADTDPA 180 TQTNAMPVVK SKNADGKVPC LAGGEDHLAT DFDFSEIDLS EFLNSDLSDK FRCFDGCNYG 240 SYNNTSLTSN SSSEQAMMFS EEMVQSWNLG GCAQDQANVG SNVQSLSPLL DCDKGEWLAS 300 GVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C03554.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010049529.1 | 0.0 | PREDICTED: myb-related protein Zm38 | ||||
Swissprot | Q9S9K9 | 8e-64 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A059CVE9 | 0.0 | A0A059CVE9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010049529.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 9e-66 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C03554.1.p |
Entrez Gene | 104438144 |