PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03456.1.p
Common NameEUGRSUZ_C03454, LOC104438093
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 508aa    MW: 57347.8 Da    PI: 6.4632
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03456.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.8e-361702622103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d+ ++ l+sw  + +sfvv+de+ef+k+vLp+yFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F+kgkk+ll
  Eucgr.C03456.1.p 170 FLRKTYEMVSDPGTDPLVSWGLRRDSFVVWDEQEFSKQVLPRYFKHSNFSSFIRQLNTYGFRKIDPDR---------WEFANRGFHKGKKHLL 253
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++ikr++++
  Eucgr.C03456.1.p 254 KNIKRRRRS 262
                       *****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-37166259IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-34166259IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-56166259IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-31170259IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-17170193IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-17208220IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340209233IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-17221233IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MALACRFPKP SSKNQVLSWK RQKPFAKSRE EIASVAVLDG GDHGEIGSQS PLYLNLTRTD  60
SPRSQSKPRA GELGCCGSLS HSGHLPEVAI GDGKIGAGSC LHSCLTRPEP CSALAVKAAK  120
IKEEVEEEEV PTIADPRDAT ILLPSCSWQA VADGVAKPME GLGEAGPTPF LRKTYEMVSD  180
PGTDPLVSWG LRRDSFVVWD EQEFSKQVLP RYFKHSNFSS FIRQLNTYGF RKIDPDRWEF  240
ANRGFHKGKK HLLKNIKRRR RSNEHRETSS STVTSDYQKA ENEVELKTLK KDQEALKTRI  300
LKLREERENF QREIEHVTER VRHAECRNQQ IFLFLTKAAK RPNFVQHLIQ KKRQKRDLET  360
CESSEKSKLL GPDAEATKCL NEAMDHMIQS PNVDCLRISD DLAQMEHWPN RVMPEDFDTI  420
QMPNPWPSMD VEDFRVSLGQ TPDQMARAGP SDLSSVFHEM SEKLLREDVV AGDDADNIEV  480
EDHLTVNDMG IYLELEGLID GLGTRVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2416125917129Heat shock factor protein 1
5d5v_B3e-2416125917129Heat shock factor protein 1
5d5v_D3e-2416125917129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252258LKNIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03456.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049470.10.0PREDICTED: heat shock factor protein HSF30
TrEMBLA0A059CUN20.0A0A059CUN2_EUCGR; Uncharacterized protein
STRINGXP_010049470.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-68heat shock transcription factor A2