PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03452.1.p
Common NameEUGRSUZ_C03452
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 390aa    MW: 44185.7 Da    PI: 6.0898
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03452.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.75.9e-36711622102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d ++++l+sws++ +sfvv+d++ef++++Lp+yFkhsnf+SF+RQLn+YgF+k++++          weF+++ F++gkk+ll
  Eucgr.C03452.1.p  71 FLRKTYEMVSDTSTDRLVSWSSSRDSFVVWDPHEFSQQILPRYFKHSNFSSFIRQLNTYGFRKIDTDG---------WEFANRGFQEGKKHLL 154
                       9***************************************************************9998.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+++
  Eucgr.C03452.1.p 155 KNIRRRRK 162
                       *****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5467160IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-3767160IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-3368160IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-187194IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.7E-3271160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-18109121IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340110134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-18122134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTTSPPGGGI TDEPCALFFE TLFRESSVEL EKAEPFARSR EEIGSVAVVG GAADEVARPM  60
QGLGEVGPAR FLRKTYEMVS DTSTDRLVSW SSSRDSFVVW DPHEFSQQIL PRYFKHSNFS  120
SFIRQLNTYG FRKIDTDGWE FANRGFQEGK KHLLKNIRRR RKLSDQTKTS SSTVASDYPE  180
AGKKAELEML KKNQEALKAE ILKLREEWEH SRHELNQVTE RIRYAESGYQ RMLLSKAAKS  240
PNFVRHVIQE RRQKRESEAC ESTEKSKFLG PDNKATKSLL EVRDHKIQNP NFECLRIGDD  300
SAQMESRSDS VLPVDLETVQ MHNPWPPPMG GADFRVMQGQ TPAQMAGASP SDLPSVFHEM  360
SEKLVRDNMV VSDDAMDDQG IYLELEGLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-246216017129Heat shock factor protein 1
5d5v_B8e-246216017129Heat shock factor protein 1
5d5v_D8e-246216017129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03452.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018726982.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CV810.0A0A059CV81_EUCGR; Uncharacterized protein
STRINGXP_010051448.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-66heat shock transcription factor A2