PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03435.1.p
Common NameEUGRSUZ_C03435, LOC104438085
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 461aa    MW: 51533.3 Da    PI: 6.2527
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03435.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.7e-351252152101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+ ++ ++sw  + +sfvv+d++ef+k+vLp+yFkhsnf+SF+RQLn+YgF+k++ ++         weF ++ F+kg+k+ll
  Eucgr.C03435.1.p 125 FLRKTYQMVSDPGTDPVVSWGLRRDSFVVWDQREFSKQVLPRYFKHSNFSSFIRQLNTYGFRKINPDR---------WEFVNQGFQKGNKHLL 208
                       9********************999*****************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++ikr+ 
  Eucgr.C03435.1.p 209 KNIKRRC 215
                       *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.22E-33121214IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-38121214IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-55121214IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-31125214IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-17125148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-17163175IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340164188IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-17176188IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGSRSPLYLN LTRIGSARSQ SKPRADELGC CGSVSHSGPL PEVAIGDGKI GAGSRLHSCP  60
SRPDPCLALA VKAAKVIEEV EEEEVATIAD PRDGTILLPS CSRQAAADDV AKPMEGLGEA  120
GPTPFLRKTY QMVSDPGTDP VVSWGLRRDS FVVWDQREFS KQVLPRYFKH SNFSSFIRQL  180
NTYGFRKINP DRWEFVNQGF QKGNKHLLKN IKRRCKFSEH RKTSSSTVTS DYQKAENEVE  240
LNTLKKGQEV LKTKILKLRE ERKSFQHEIE QVAERVCHAE CRNQQIFLFL TKAAKSPNFV  300
HHLIQKKSQK RDLETCESSK KSKLLGPDAE ATKFLNEAMD HVIKSPNVDC LRISDDLAQT  360
EHWPNMVVLE DFDTIQMHNT WPSMDGEDFR VLLGQTPDQM ARASPSDLSS VLDGMSEKLL  420
GEDMAIGDDA DNIEVEDNLT VNDTGIYLEL EGLIDGWGTK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2411621517130Heat shock factor protein 1
5d5v_B3e-2411621517130Heat shock factor protein 1
5d5v_D3e-2411621517130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207213LKNIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03435.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049466.10.0PREDICTED: heat shock factor protein HSF30
RefseqXP_018726980.10.0PREDICTED: heat shock factor protein HSF30
TrEMBLA0A059CVU20.0A0A059CVU2_EUCGR; Uncharacterized protein
STRINGXP_010049466.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-66heat shock transcription factor A2