PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03434.1.p
Common NameEUGRSUZ_C03434, LOC104438084
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 494aa    MW: 54933 Da    PI: 5.0028
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03434.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.4e-361512422102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d++++ ++sws++ +sfvv+d++ef+k+vLp+yFkhsnf+SF+RQLn+YgF+k+++++         weF+++ F++gkk+ll
  Eucgr.C03434.1.p 151 FLRKTYEMVSDPSTDPVLSWSSSRDSFVVWDPHEFSKQVLPRYFKHSNFSSFIRQLNTYGFRKIDTDR---------WEFANRGFQEGKKHLL 234
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+++
  Eucgr.C03434.1.p 235 KNIRRRRK 242
                       *****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.9E-58147240IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-35147240IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-38147240IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-18151174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-32151240IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-18189201IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340190214IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-18202214IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MTTALPGGGC TNGPCASFLD TLFRESSVEL KKAGPFTKSQ EEFASIAVLD SGDPGQLGSL  60
FDSVPSPQLA IGHGEVDTGL LLRPCLTRPE PHSALAAQVV KIEEGEEDEE VEIIADPRDA  120
AAVSPSCSLR AAADEVARPM QGLGEAGPAP FLRKTYEMVS DPSTDPVLSW SSSRDSFVVW  180
DPHEFSKQVL PRYFKHSNFS SFIRQLNTYG FRKIDTDRWE FANRGFQEGK KHLLKNIRRR  240
RKLSDHRTTS SSTVASDYPE AGKEAELEML KRDQEALKAE ILKLREEREN SQHEINQVIE  300
RIRYAECRCW RMFLFLSKAA KTPNFVQHVI QEKRQKRELE ACELSKKSKL LGPDDEATKY  360
LLDITDHKIQ SPNVDCLRIG DDSAPIESWP NNVLPLDLET VQMHNPWSPP MGGADFRVMQ  420
GQTPDQMAGA SPSDLPSVFH EKSEKLLGDN MVVGNDAMDD PGIYLELEGL IEKSCGWREY  480
TIGLGKQAAG LMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-2514224017129Heat shock factor protein 1
5d5v_B9e-2514224017129Heat shock factor protein 1
5d5v_D9e-2514224017129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03434.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049465.20.0PREDICTED: heat shock factor protein HSF30
TrEMBLA0A059CV250.0A0A059CV25_EUCGR; Uncharacterized protein
STRINGXP_010049465.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-75heat shock transcription factor A2