PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03433.1.p
Common NameEUGRSUZ_C03433
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 407aa    MW: 45857.5 Da    PI: 6.5196
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03433.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1171.2e-36671572101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Flkk+ye+++d+++++++sws++g  fvv+d +ef+k+vLp+yFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F++gkk+ll
  Eucgr.C03433.1.p  67 FLKKTYEMVSDPSTDTVVSWSSSGGRFVVWDAHEFSKQVLPRYFKHSNFSSFIRQLNTYGFRKMDPDR---------WEFANRGFQEGKKHLL 150
                       9****************************************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r++
  Eucgr.C03433.1.p 151 KNIRRRR 157
                       *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5663156IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3463156IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-3863156IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3267156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-196790IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-19105117IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340106130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-19118130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MATAGAGGGH TDGPCTSFFD TLFQESSVEL EKAEPFAKSR EEIASIAVVG GVVRPMHGLG  60
ETGPAPFLKK TYEMVSDPST DTVVSWSSSG GRFVVWDAHE FSKQVLPRYF KHSNFSSFIR  120
QLNTYGFRKM DPDRWEFANR GFQEGKKHLL KNIRRRRAPS NHMKTSSSTV ASDYWEAGKE  180
AELEMLKKNQ EALKAEILKL REEREHSQHE LNQVTEWIRY AESRYQRMFL FLSKAAKSPN  240
FAQHVNQERR QKRESEACES SKKSKLLGPD DKATKCLLEV ADHKIQNPNF ECLRIGDDSA  300
QMESRSNNVL PVDVETVQMH TPWPPPMGGA DFRVMQGQTP DQMAGASPSD LPFVFHEKSE  360
KLLGENMVVG DEAMDDPGFY LELEGLIEKS CGWSEYTSGL GSKRRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-25431563129Heat shock factor protein 1
5d5v_B4e-25431563129Heat shock factor protein 1
5d5v_D4e-25431563129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03433.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051445.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CUM00.0A0A059CUM0_EUCGR; Uncharacterized protein
STRINGXP_010051445.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.18e-72heat shock transcription factor A2