PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03293.1.p
Common NameEUGRSUZ_C03293
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 1120aa    MW: 124934 Da    PI: 6.7666
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03293.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.1e-23126227199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++       ++++++ +lt +d++ +sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  Eucgr.C03293.1.p 126 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfTMQPPCQ-ELTARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RD 215
                       99*****************************97777785.*************************************************..45 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++++r+
  Eucgr.C03293.1.p 216 EKSQLLLGIRRA 227
                       677789999997 PP
2Auxin_resp115.54.7e-38252335183
        Auxin_resp   1 aahaastksvFevvYnPr.astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+++YnPr as+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdld+vrW+nS+Wr+L+
  Eucgr.C03293.1.p 252 AAHAAANNSPFTIFYNPRwASPSEFVIPLAKYNKAFYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDSVRWKNSQWRNLQ 335
                       79***************85899************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-20125226No hitNo description
PfamPF023621.2E-21126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139126228IPR003340B3 DNA binding domain
SMARTSM010191.2E-23126228IPR003340B3 DNA binding domain
PfamPF065072.1E-33252335IPR010525Auxin response factor
PfamPF023091.0E-89961084IPR033389AUX/IAA domain
PROSITE profilePS5174525.8929981083IPR000270PB1 domain
SuperFamilySSF542772.81E-710131076No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MKVPSNGFLA GGGEGEKKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TTCVPSYPNL PPKLICMLHN VTLHADLETD EVYAQMTLQP VSKYDQEALL ASDMGLKQSR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPSLDFTMQ PPCQELTARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRW ASPSEFVIPL AKYNKAFYTQ VSLGMRFRMM  300
FETEESGVRR YMGTITGISD LDSVRWKNSQ WRNLQVGWDE STAGERPSRV SMWEIEPVVT  360
PFYICPPPFF RPKFPRQPDD ESDVENAFKR AMPWLGDEFG IKDTPSSIFP GLSLMQWMSM  420
QQSNPLQATQ SGLLPPMLSS TGLHNNLGID DPSKLLSFQA PTQGLQFNKT NPQNQVSQLL  480
QPSMAWSQQH QLQQLLQNPL GHQQQQQQQQ LQRQQQQQLQ SSQQQTPQQL PQSQPPQQQP  540
LQPQQFQQQS PHQPSQQTSQ QQQVVQTPLG NGGVVTSNQF PSQMVQQSAL YSQLQQQQQQ  600
QQQQLLTTQN APSQPSILGI NKVPVHPTSV SQDSKFQSQM EQQQPSLLQR HQQQPMQMQP  660
SSLLQQSWTQ RAQPQLQPQL PQVLQQNLSE QQIQLQLQKL QQQQQHQQQL PNPAGPLLQP  720
QLQQQQQQQQ QHQQQVVPQN QMPLSQQQLV CNSLPTPALL PPQPSNPNHL YGQQKALTAV  780
RALSGLTDGD GPSCSTSPST NNCHIPSSNF LCKNQVAQPV LVGDSSLIEP MNHLIQEHQM  840
KPDARIKHEL PSSKGHDQLK YKASVTDPLE VSSSATSYCL DATAAQQNFS LPTFCLDSDV  900
QSQPRNTSPF AANIDNLAAD TLLSRGFDSQ KDLQNLLSTY GGGTPRDIET ELSTAAISSQ  960
SFGVPSMPFK AGCSNDVAIN DTGVLNGGIW SSQTQRMRTY TKVQKRGSVG RSIDITRYRG  1020
YDELRRDLAR MFGIEGQLED PHRTDWKLVY MDHENDILLV GDDPWEEFVT CVQSVKILSS  1080
TEVQQMSLDG DLGLVPIPNQ ASSGTDSGNA WRGDILISR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1671635647388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03293.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049374.10.0PREDICTED: auxin response factor 19 isoform X3
TrEMBLA0A059CUQ30.0A0A059CUQ3_EUCGR; Auxin response factor
STRINGXP_010049370.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19