PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C03153.1.p | ||||||||
Common Name | EUGRSUZ_C03153, LOC104437928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 26840.2 Da PI: 4.8961 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++ Ed++l+d+vk +G g W ++ + g++R++k+c++rw++yl Eucgr.C03153.1.p 16 KGVWSALEDQILIDYVKVHGQGKWGKVRKVTGLRRCGKSCRLRWLNYL 63 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Eucgr.C03153.1.p 69 RGNISLEEEELIIRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNS 112 78999*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.717 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-28 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.49E-9 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.638 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-25 | 71 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.15E-10 | 73 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGRNPSSGKD GLKLKKGVWS ALEDQILIDY VKVHGQGKWG KVRKVTGLRR CGKSCRLRWL 60 NYLRPDIKRG NISLEEEELI IRLHKLLGNR WALIAGRLPG RTDNEIKNYW NSTIKKKLVQ 120 ENGDQPMNSK WEDDKPLNET ATAESQGDAH RESKPCNSEG VVSDRMMESI EEKGEGGDCE 180 DDTISWENMM MDLNVEDMCM SENQHSELFE GNEDGGNQNG WISEEMLSTW VAELLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-28 | 14 | 118 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C03153.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010049278.1 | 1e-172 | PREDICTED: transcription factor WER | ||||
Swissprot | O49608 | 2e-53 | MYB32_ARATH; Transcription factor MYB32 | ||||
TrEMBL | A0A059CTT8 | 1e-170 | A0A059CTT8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010049278.1 | 1e-171 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34990.1 | 6e-42 | myb domain protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C03153.1.p |
Entrez Gene | 104437928 |