PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03026.1.p
Common NameEUGRSUZ_C03026
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 241aa    MW: 26509.2 Da    PI: 10.4317
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-13131176247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++WT+eE+  ++ + + lG+g+W+ I++++  +Rt+ q+ s+ qky
  Eucgr.C03026.1.p 131 LPWTEEEHRTFLVGLETLGKGDWRGISKKFVGTRTPTQVASHAQKY 176
                       69****************************99*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.497125181IPR017930Myb domain
SuperFamilySSF466891.95E-18126182IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-17128180IPR006447Myb domain, plants
SMARTSM007175.8E-10129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10131176IPR009057Homeodomain-like
PfamPF002491.5E-11132176IPR001005SANT/Myb domain
CDDcd001674.43E-10132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRKCSHCGF MGHNSRTCAS IRRRDASFGG GGRVKLFGVQ LEAAYPCGVA SRLPLKKSLS  60
MDCLMPSVRV LTSSSPLSSA TNSSLSLRAA CDVGDRLLRD ESPNKAANSP SNDGYASDGF  120
LGRAQERKKG LPWTEEEHRT FLVGLETLGK GDWRGISKKF VGTRTPTQVA SHAQKYFLRQ  180
KSLLPRRNKR RPSLFDWGWK DAVLVIMDKS PSQVNLSPQY VCSRPNLAQP GEIAEQEWYS  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049179.21e-142PREDICTED: protein REVEILLE 6
TrEMBLA0A059CTZ81e-177A0A059CTZ8_EUCGR; Uncharacterized protein
STRINGXP_010052392.11e-141(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54962747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-46MYB_related family protein