PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02776.1.p
Common NameEUGRSUZ_C02776
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 983aa    MW: 109942 Da    PI: 9.8852
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02776.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-104681340
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                       W++eE e+++da +++G + Wk++a+ +  +Rt  ++
  Eucgr.C02776.1.p 46 QWSKEELERFYDAYRKHGRD-WKKVAAAVR-NRTVDMV 81
                      6*****************77.*********.***8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.54E-104190IPR009057Homeodomain-like
PROSITE profilePS512939.7074295IPR017884SANT domain
SMARTSM007173.0E-54391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-64684IPR009057Homeodomain-like
PfamPF002499.5E-94685IPR001005SANT/Myb domain
CDDcd001677.06E-64781No hitNo description
SMARTSM011357.0E-59653754IPR033471DIRP domain
PfamPF065842.5E-33653753IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    Send to blast
MAPTRKSRSV YKRYSNLNEV SPEKDVGSSK SSRNRKKKLS DLLGPQWSKE ELERFYDAYR  60
KHGRDWKKVA AAVRNRTVDM VEALYNMNRA YLSLPEGTAS VVGLVAMMTD HYNVLEGSDE  120
EESNDGTEIR NTPKRKRGKV QLGGSREDLH SKADLSSDGC LSLLKRRRVD NSLPRVVGKR  180
TPRFPVSFLN KKDGRENHVS LNKRGRKSEA DATDDDVAHG AALVLTAASH RGGSPQVSRS  240
PYGRKGQLKG SPVQSWERMH SQSDAAKYGD ASLDEEWLEG SIGSRGTENG DYEKYTRSLT  300
DIEGVGTVEV SRKGKKFYGK KEKVEGMVEK EFEDGGGACS GTEEGGNDNS LKGKVKFEVS  360
NEKRGHSHQT QRKRSKKLFF GDESSDLDAL QTLADLSLMM PVSTMESEFC GTESSVQLKE  420
EKTTRDIDDK LTVPEATSAD RQRDKALGKE KTSAVDGRKL NLVRASDINS DTISKAKGQL  480
LSSNKPKRKS KPITSKVINA EAHDNFHLGE SLKNEASAEE GKTLASQQST REIKSAFARE  540
GRSSLSKTKK SAKSAQNLSD MDQKGTETDL MGLITQVPAD NQFNLPTKSK SRRKKDLRQA  600
LKPKEMSGSD NTVRNRTDKR GIYVQDKAPY LKDKLLSCLS SDLARRWCIF EWFYSAIDYP  660
WFAKREFVDY LNHVGLGHIP RLTRVEWSVI RSSLGKPRRF SENFLREERK KLEQYRESVR  720
KHYTELRTGI REGLPTDLAR PLFVGQRVIA LHPKTREVHD GSVLTVDHDK CRIQFDRPDI  780
GVEFVMDVDC MPLNPLENMP EALRRRSLFI DKFPVISKEP QIEGNISFGG ALLYDSSGHL  840
ASGRSPMSNL MRQAKDSNHA ILQGKVSAPG VVSTQQTFCS QPCRTVYSQA READIRALSD  900
LTHALDKKEA LLMELRNMNN DVLDDQINGD GSLKDSESFK KHYATVLVQL KEAGGQASSA  960
LVHLRERNTY PGIRCLLGSS LQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164168KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02776.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048971.20.0PREDICTED: LOW QUALITY PROTEIN: protein ALWAYS EARLY 2-like
TrEMBLA0A059CSP10.0A0A059CSP1_EUCGR; Uncharacterized protein
STRINGXP_010048971.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29622241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding