PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02727.4.p
Common NameEUGRSUZ_C02727, LOC104437634
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 223aa    MW: 25467.6 Da    PI: 5.6688
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02727.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.4e-081601932154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp++e++++L +++gL+ +q+ +WF N+R +
  Eucgr.C02727.4.p 160 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 193
                       469*****************************87 PP
2ELK28.82.8e-10114135122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y+++++++++E++
  Eucgr.C02727.4.p 114 ELKHELKQGYKEKIIDIREEIL 135
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.1E-28257IPR005541KNOX2
PfamPF037913.6E-21756IPR005541KNOX2
PROSITE profilePS512139.865114134IPR005539ELK domain
PfamPF037894.5E-5114135IPR005539ELK domain
SMARTSM011880.0024114135IPR005539ELK domain
PROSITE profilePS5007111.855134197IPR001356Homeobox domain
SuperFamilySSF466892.4E-16136200IPR009057Homeodomain-like
SMARTSM003897.2E-11136201IPR001356Homeobox domain
CDDcd000861.11E-11137198No hitNo description
Gene3DG3DSA:1.10.10.604.5E-25141198IPR009057Homeodomain-like
PfamPF059207.7E-18154193IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSQGLVADDK ELDQFMTHYV LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSLTGVSP  60
GEGTGATMSD DEDDQVDSDA NLFDGSLDGT DSLGFGPLIP TETERSLMER VRQELKHELK  120
QGYKEKIIDI REEILRKRRA GKLPGDTTSV LKQWWQTHSK WPYPTEEDKA RLVQETGLQL  180
KQINNWFINQ RKRNWHSNPS TSTVLKSKRK SNAGENSSDR FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A9e-13137201872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02727.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048922.11e-165PREDICTED: homeobox protein knotted-1-like 4 isoform X1
SwissprotP480001e-146KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A059CSI91e-164A0A059CSI9_EUCGR; Uncharacterized protein
TrEMBLA0A059CT021e-165A0A059CT02_EUCGR; Uncharacterized protein
STRINGXP_010048922.11e-164(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-141KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]