PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02520.1.p
Common NameEUGRSUZ_C02520
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 310aa    MW: 33974.5 Da    PI: 4.6741
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-1693144155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Eucgr.C02520.1.p  93 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDMAAIEYRG 144
                       89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.943158IPR001471AP2/ERF domain
SMARTSM003802.0E-41964IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-102460IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-102459IPR001471AP2/ERF domain
CDDcd000183.91E-2593154No hitNo description
SuperFamilySSF541717.19E-1893154IPR016177DNA-binding domain
PfamPF008471.2E-1193144IPR001471AP2/ERF domain
SMARTSM003805.0E-2594158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-1894153IPR001471AP2/ERF domain
PROSITE profilePS5103218.25594152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGSSLLPSGY LHMLVICVGS CSITSVYLGA YDDEEAAAHA YDLAALKYWG RDTILNFPVS  60
TYETELVEME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  120
YLGTYATQEE AAVAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNPDAAAAA AAAASGITQP  180
NTNNNNTDVL TSNLSDGFGL SYSQKPQTSD SNQEAIQAQP RSATSALGLL LQSSKFREMM  240
EMASRADDAA SATPQEESTE ALKRSFPADV QTYFECHQDS NNFGGDGDDI IFRELNTYVP  300
PSFQCEFDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051046.20.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN42e-75AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A059CT740.0A0A059CT74_EUCGR; Uncharacterized protein
STRINGXP_010051046.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.23e-74ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]