PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C02178.2.p | ||||||||
Common Name | EUGRSUZ_C02178 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ARF | ||||||||
Protein Properties | Length: 1054aa MW: 116700 Da PI: 6.3866 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.5 | 9e-22 | 71 | 172 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + Eucgr.C02178.2.p 71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDTMWNFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--R 159 99*****************************954.5444.48************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++l+++++r+ Eucgr.C02178.2.p 160 DDKQQLLLGIRRA 172 567778**99997 PP | |||||||
2 | Auxin_resp | 109 | 5.1e-36 | 197 | 285 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnP.....rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnP ras+seFv++++k+ ka++ +++s+GmRf+m+feteds +rr++Gt++g+sd+dpvrW++S+Wr+L+ Eucgr.C02178.2.p 197 AAHAAANNSPFTVFYNPscfalRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEDSGTRRFMGTITGMSDIDPVRWKDSQWRNLQ 285 79***************8888889***************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.05E-43 | 60 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-40 | 65 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.75E-17 | 70 | 162 | No hit | No description |
Pfam | PF02362 | 1.1E-19 | 71 | 172 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.843 | 71 | 173 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-21 | 71 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.5E-31 | 197 | 285 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.5E-7 | 939 | 1026 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.884 | 941 | 1025 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.42E-7 | 952 | 1019 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1054 aa Download sequence Send to blast |
MKKDVDAQVP NYPNLPSKLL CLLHSVTLHA DPETDEVFAQ MTLQPVPSFD KEALLRSDLA 60 LKTTKPQPDF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LMARDLHDTM 120 WNFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD DKQQLLLGIR RANRQPTNLS 180 SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPSCFALRA SPSEFVIPLA KYYKAVYSNQ 240 ISLGMRFRMM FETEDSGTRR FMGTITGMSD IDPVRWKDSQ WRNLQVGWDE STAGEKRTRV 300 SSWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDDLSDLDS LFKRTTMPWL VDDLSMKDPP 360 ALSGLGFMHW MSMQQSPSFA NSIQSNYMPN LSNSVLQNLS GTDPSRQLGF SAPQMAQLNN 420 LQFNTQRPPQ QAQQLDQLTK LPSTLNPLSN IVQPQQQLTD ISQQSRQSLI NHTLPSTQVQ 480 AQVLQSQSLI QSSTLLPQQS LNQNQPFHRS LPQNLHQPQQ QQIMGQNQQQ SALNSQMPDQ 540 SSSQLPMPDN QIQLQMIQKL QQQQQQQQSL LAQQSALQQP THPQQLQEQR QHPDVSQSFS 600 KSMVTSQMLE MPQSTANSFS QPNIIPQQIQ KNNSQLNVRF SNLSQQPKFQ QEQSGLLPEM 660 VGHMGLPQIS TSHASASASM LTGAAAGGPS VTTDDMPCSA SASGQNCANI VQSMMNGRPH 720 RSASISEDMS QSTATFWNPS ALETIGSNGN NMMKDFQPKP DVKPSLDVSK GQNQGFFSAQ 780 TYLNGATTQT DYLDASSSTT SVCLSQSDAH IQQNNSSVSY NQQSMLFRDT SQDREVQADI 840 RSSVPFSSNA DVQAGIPVNS DSMFGKGMVG LGKGFANDVP SAGILADYDN KEPQQLSSSM 900 VSQSFGVSDV AFNLMESALN ESTLVSRGPW GPAAPQFQRM RTFTKVYKRG AVGRSVDITR 960 YSGYDELKQD LARRFGIEGQ LEDGQKVGWK LVYVDHENDV LLVGDDPWED FVNCVRCIKI 1020 LSPQEVQQMS LDGDFGNTTL PNQACSSSDG GNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-141 | 2 | 306 | 89 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C02178.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048533.1 | 0.0 | PREDICTED: auxin response factor 19 isoform X1 | ||||
TrEMBL | A0A059CQR1 | 0.0 | A0A059CQR1_EUCGR; Auxin response factor | ||||
STRING | XP_010048533.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C02178.2.p |