PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02178.1.p
Common NameEUGRSUZ_C02178, LOC104437303
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 1120aa    MW: 123242 Da    PI: 6.3969
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02178.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.49.7e-22137238199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  Eucgr.C02178.1.p 137 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDTMWNFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--R 225
                       99*****************************954.5444.48************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++++l+++++r+
  Eucgr.C02178.1.p 226 DDKQQLLLGIRRA 238
                       567778**99997 PP
2Auxin_resp108.95.5e-36263351183
        Auxin_resp   1 aahaastksvFevvYnP.....rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+v+YnP     ras+seFv++++k+ ka++ +++s+GmRf+m+feteds +rr++Gt++g+sd+dpvrW++S+Wr+L+
  Eucgr.C02178.1.p 263 AAHAAANNSPFTVFYNPscfalRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEDSGTRRFMGTITGMSDIDPVRWKDSQWRNLQ 351
                       79***************8888889***************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-43126266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-40131252IPR015300DNA-binding pseudobarrel domain
CDDcd100176.28E-17136228No hitNo description
SMARTSM010192.6E-21137239IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843137239IPR003340B3 DNA binding domain
PfamPF023621.2E-19137238IPR003340B3 DNA binding domain
PfamPF065072.7E-31263351IPR010525Auxin response factor
PfamPF023092.7E-710051092IPR033389AUX/IAA domain
PROSITE profilePS5174526.88410071091IPR000270PB1 domain
SuperFamilySSF542771.08E-610181085No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MKMPASGAGA PSATATASPC EGGGEKKSVI NPELWQACAG PLVNLPPAGT HVVYFPQGHS  60
EQVAASMKKD VDAQVPNYPN LPSKLLCLLH SVTLHADPET DEVFAQMTLQ PVPSFDKEAL  120
LRSDLALKTT KPQPDFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELMAR  180
DLHDTMWNFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDDKQQ LLLGIRRANR  240
QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPS CFALRASPSE FVIPLAKYYK  300
AVYSNQISLG MRFRMMFETE DSGTRRFMGT ITGMSDIDPV RWKDSQWRNL QVGWDESTAG  360
EKRTRVSSWE IEPVTAPFFI CPPPFFRSKR PRQPGMPDDD LSDLDSLFKR TTMPWLVDDL  420
SMKDPPALSG LGFMHWMSMQ QSPSFANSIQ SNYMPNLSNS VLQNLSGTDP SRQLGFSAPQ  480
MAQLNNLQFN TQRPPQQAQQ LDQLTKLPST LNPLSNIVQP QQQLTDISQQ SRQSLINHTL  540
PSTQVQAQVL QSQSLIQSST LLPQQSLNQN QPFHRSLPQN LHQPQQQQIM GQNQQQSALN  600
SQMPDQSSSQ LPMPDNQIQL QMIQKLQQQQ QQQQSLLAQQ SALQQPTHPQ QLQEQRQHPD  660
VSQSFSKSMV TSQMLEMPQS TANSFSQPNI IPQQIQKNNS QLNVRFSNLS QQPKFQQEQS  720
GLLPEMVGHM GLPQISTSHA SASASMLTGA AAGGPSVTTD DMPCSASASG QNCANIVQSM  780
MNGRPHRSAS ISEDMSQSTA TFWNPSALET IGSNGNNMMK DFQPKPDVKP SLDVSKGQNQ  840
GFFSAQTYLN GATTQTDYLD ASSSTTSVCL SQSDAHIQQN NSSVSYNQQS MLFRDTSQDR  900
EVQADIRSSV PFSSNADVQA GIPVNSDSMF GKGMVGLGKG FANDVPSAGI LADYDNKEPQ  960
QLSSSMVSQS FGVSDVAFNL MESALNESTL VSRGPWGPAA PQFQRMRTFT KVYKRGAVGR  1020
SVDITRYSGY DELKQDLARR FGIEGQLEDG QKVGWKLVYV DHENDVLLVG DDPWEDFVNC  1080
VRCIKILSPQ EVQQMSLDGD FGNTTLPNQA CSSSDGGNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1642437245388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02178.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048533.10.0PREDICTED: auxin response factor 19 isoform X1
TrEMBLA0A059CR050.0A0A059CR05_EUCGR; Auxin response factor
STRINGXP_010048533.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19