PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C01515.5.p | ||||||||
Common Name | EUGRSUZ_C01515, LOC104436916 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | YABBY | ||||||||
Protein Properties | Length: 111aa MW: 12702.4 Da PI: 10.8288 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 136.2 | 3.8e-42 | 8 | 83 | 94 | 170 |
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++s ++ + +v+++ v+rPPekrqrvPsayn+fikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Eucgr.C01515.5.p 8 KYNSRITMRAP-STNVTEQRVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 83 44444444333.3444555679*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-40 | 12 | 83 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.2E-8 | 26 | 76 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.6E-5 | 30 | 77 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MDMGSSSKYN SRITMRAPST NVTEQRVVNR PPEKRQRVPS AYNQFIKEEI QRIKASNPDI 60 SHREAFSTAA KNWAHFPHIH FGLMLDNNNQ AKMDNHSEKH LMSRAALLNK * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C01515.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048072.1 | 8e-78 | PREDICTED: axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 6e-49 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A059CP63 | 2e-76 | A0A059CP63_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059CPL2 | 2e-76 | A0A059CPL2_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059CQE3 | 2e-76 | A0A059CQE3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010048072.1 | 3e-77 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-51 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C01515.5.p |
Entrez Gene | 104436916 |
Publications ? help Back to Top | |||
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